Analysis of interatomic Contacts of Structural Units in PDB entry:
8FKO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FKO entry

There are 6 chains in PDB entry 8FKO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 4	LYS 292
B	ASP 5	LYS 292
C	ASP 5	LYS 292
D	ASP 5	LYS 292
E	PHE 9	LYS 292
F	SER 57	LYS 292

There are 79 helices in PDB entry 8FKO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	15	Right-handed 310
Helix 2	AA2	A	56	69	Right-handed alpha
Helix 3	AA3	A	98	107	Right-handed alpha
Helix 4	AA4	A	110	131	Right-handed alpha
Helix 5	AA5	A	139	141	Right-handed 310
Helix 6	AA6	A	156	172	Right-handed alpha
Helix 7	AA7	A	180	189	Right-handed alpha
Helix 8	AA8	A	195	211	Right-handed alpha
Helix 9	AA9	A	219	229	Right-handed alpha
Helix 10	AB1	A	239	243	Right-handed 310
Helix 11	AB2	A	244	255	Right-handed alpha
Helix 12	AB3	A	258	262	Right-handed 310
Helix 13	AB4	A	264	269	Right-handed alpha
Helix 14	AB5	A	281	292	Right-handed alpha
Helix 15	AB6	B	12	15	Right-handed 310
Helix 16	AB7	B	56	69	Right-handed alpha
Helix 17	AB8	B	98	107	Right-handed alpha
Helix 18	AB9	B	110	131	Right-handed alpha
Helix 19	AC1	B	139	141	Right-handed 310
Helix 20	AC2	B	156	167	Right-handed alpha
Helix 21	AC3	B	180	190	Right-handed alpha
Helix 22	AC4	B	195	211	Right-handed alpha
Helix 23	AC5	B	219	229	Right-handed alpha
Helix 24	AC6	B	239	243	Right-handed 310
Helix 25	AC7	B	244	255	Right-handed alpha
Helix 26	AC8	B	264	270	Right-handed alpha
Helix 27	AC9	B	271	276	Right-handed alpha
Helix 28	AD1	B	281	290	Right-handed alpha
Helix 29	AD2	C	12	15	Right-handed 310
Helix 30	AD3	C	56	69	Right-handed alpha
Helix 31	AD4	C	98	107	Right-handed alpha
Helix 32	AD5	C	110	131	Right-handed alpha
Helix 33	AD6	C	139	141	Right-handed 310
Helix 34	AD7	C	156	172	Right-handed alpha
Helix 35	AD8	C	180	190	Right-handed alpha
Helix 36	AD9	C	195	211	Right-handed alpha
Helix 37	AE1	C	219	229	Right-handed alpha
Helix 38	AE2	C	239	243	Right-handed 310
Helix 39	AE3	C	244	255	Right-handed alpha
Helix 40	AE4	C	264	269	Right-handed alpha
Helix 41	AE5	C	271	276	Right-handed alpha
Helix 42	AE6	C	281	292	Right-handed alpha
Helix 43	AE7	D	12	15	Right-handed 310
Helix 44	AE8	D	56	69	Right-handed alpha
Helix 45	AE9	D	99	107	Right-handed alpha
Helix 46	AF1	D	110	131	Right-handed alpha
Helix 47	AF2	D	139	141	Right-handed 310
Helix 48	AF3	D	156	167	Right-handed alpha
Helix 49	AF4	D	180	190	Right-handed alpha
Helix 50	AF5	D	195	211	Right-handed alpha
Helix 51	AF6	D	219	228	Right-handed alpha
Helix 52	AF7	D	244	255	Right-handed alpha
Helix 53	AF8	D	264	270	Right-handed alpha
Helix 54	AF9	D	281	292	Right-handed alpha
Helix 55	AG1	E	12	15	Right-handed 310
Helix 56	AG2	E	59	68	Right-handed alpha
Helix 57	AG3	E	99	107	Right-handed alpha
Helix 58	AG4	E	110	131	Right-handed alpha
Helix 59	AG5	E	139	141	Right-handed 310
Helix 60	AG6	E	156	172	Right-handed alpha
Helix 61	AG7	E	180	189	Right-handed alpha
Helix 62	AG8	E	195	211	Right-handed alpha
Helix 63	AG9	E	219	229	Right-handed alpha
Helix 64	AH1	E	239	243	Right-handed 310
Helix 65	AH2	E	244	255	Right-handed alpha
Helix 66	AH3	E	264	269	Right-handed alpha
Helix 67	AH4	E	271	276	Right-handed alpha
Helix 68	AH5	E	280	292	Right-handed alpha
Helix 69	AH6	F	58	69	Right-handed alpha
Helix 70	AH7	F	98	107	Right-handed alpha
Helix 71	AH8	F	110	131	Right-handed alpha
Helix 72	AH9	F	156	172	Right-handed alpha
Helix 73	AI1	F	180	189	Right-handed alpha
Helix 74	AI2	F	195	211	Right-handed alpha
Helix 75	AI3	F	219	229	Right-handed alpha
Helix 76	AI4	F	244	255	Right-handed alpha
Helix 77	AI5	F	264	269	Right-handed alpha
Helix 78	AI6	F	271	276	Right-handed alpha
Helix 79	AI7	F	281	291	Right-handed alpha

There are 11 sheets in PDB entry 8FKO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	25	first strand
Strand 2	A	30	36	anti-parallel
Strand 3	A	42	49	anti-parallel
Strand 4	A	86	92	anti-parallel
Strand 5	A	77	82	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	145	first strand
Strand 2	A	151	153	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	24	first strand
Strand 2	B	30	36	anti-parallel
Strand 3	B	42	49	anti-parallel
Strand 4	B	86	92	anti-parallel
Strand 5	B	77	83	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	145	first strand
Strand 2	B	151	153	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	22	first strand
Strand 2	C	30	36	anti-parallel
Strand 3	C	42	49	anti-parallel
Strand 4	C	86	92	anti-parallel
Strand 5	C	77	83	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	145	first strand
Strand 2	C	151	153	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	25	first strand
Strand 2	D	30	36	anti-parallel
Strand 3	D	42	49	anti-parallel
Strand 4	D	86	92	anti-parallel
Strand 5	D	77	82	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	98	first strand
Strand 2	D	143	145	anti-parallel
Strand 3	D	151	153	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	24	first strand
Strand 2	E	30	36	anti-parallel
Strand 3	E	42	47	anti-parallel
Strand 4	E	88	92	anti-parallel
Strand 5	E	77	81	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	97	98	first strand
Strand 2	E	143	145	anti-parallel
Strand 3	E	151	153	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	143	145	first strand
Strand 2	F	151	153	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FKO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FKO