Analysis of interatomic Contacts of Structural Units in PDB entry:
8FMF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FMF entry

There are 2 chains in PDB entry 8FMF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 14	PRO 382
B	ASN 15	ALA 319

There are 54 helices in PDB entry 8FMF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	28	Right-handed alpha
Helix 2	AA2	A	73	77	Right-handed 310
Helix 3	AA3	A	79	81	Right-handed 310
Helix 4	AA4	A	87	97	Right-handed alpha
Helix 5	AA5	A	102	122	Right-handed alpha
Helix 6	AA6	A	146	157	Right-handed alpha
Helix 7	AA7	A	179	192	Right-handed alpha
Helix 8	AA8	A	192	202	Right-handed alpha
Helix 9	AA9	A	218	232	Right-handed alpha
Helix 10	AB1	A	281	289	Right-handed alpha
Helix 11	AB2	A	309	330	Right-handed alpha
Helix 12	AB3	A	342	353	Right-handed alpha
Helix 13	AB4	A	368	371	Right-handed 310
Helix 14	AB5	B	17	28	Right-handed alpha
Helix 15	AB6	B	40	45	Right-handed alpha
Helix 16	AB7	B	50	55	Right-handed alpha
Helix 17	AB8	B	79	81	Right-handed 310
Helix 18	AB9	B	87	95	Right-handed alpha
Helix 19	AC1	B	106	122	Right-handed alpha
Helix 20	AC2	B	123	126	Right-handed 310
Helix 21	AC3	B	136	143	Right-handed alpha
Helix 22	AC4	B	146	157	Right-handed alpha
Helix 23	AC5	B	179	199	Right-handed alpha
Helix 24	AC6	B	218	230	Right-handed alpha
Helix 25	AC7	B	281	289	Right-handed alpha
Helix 26	AC8	B	309	331	Right-handed alpha
Helix 27	AC9	B	342	353	Right-handed alpha
Helix 28	AD1	B	368	371	Right-handed 310
Helix 29	AD2	C	17	28	Right-handed alpha
Helix 30	AD3	C	87	97	Right-handed alpha
Helix 31	AD4	C	102	122	Right-handed alpha
Helix 32	AD5	C	146	157	Right-handed alpha
Helix 33	AD6	C	179	192	Right-handed alpha
Helix 34	AD7	C	192	201	Right-handed alpha
Helix 35	AD8	C	201	206	Right-handed alpha
Helix 36	AD9	C	218	230	Right-handed alpha
Helix 37	AE1	C	281	289	Right-handed alpha
Helix 38	AE2	C	309	329	Right-handed alpha
Helix 39	AE3	C	342	353	Right-handed alpha
Helix 40	AE4	C	368	371	Right-handed 310
Helix 41	AE5	D	17	28	Right-handed alpha
Helix 42	AE6	D	40	45	Right-handed alpha
Helix 43	AE7	D	79	81	Right-handed 310
Helix 44	AE8	D	87	95	Right-handed alpha
Helix 45	AE9	D	106	122	Right-handed alpha
Helix 46	AF1	D	123	126	Right-handed 310
Helix 47	AF2	D	136	143	Right-handed alpha
Helix 48	AF3	D	146	157	Right-handed alpha
Helix 49	AF4	D	179	199	Right-handed alpha
Helix 50	AF5	D	218	230	Right-handed alpha
Helix 51	AF6	D	281	289	Right-handed alpha
Helix 52	AF7	D	309	331	Right-handed alpha
Helix 53	AF8	D	342	353	Right-handed alpha
Helix 54	AF9	D	368	371	Right-handed 310

There are 15 sheets in PDB entry 8FMF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	A	47	48	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	83	86	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	169	first strand
Strand 2	A	130	135	parallel
Strand 3	A	211	216	parallel
Strand 4	A	235	239	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	293	298	anti-parallel
Strand 3	A	270	275	parallel
Strand 4	A	335	340	parallel
Strand 5	A	361	366	parallel
Strand 6	A	374	380	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	59	first strand
Strand 2	B	83	86	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	161	first strand
Strand 2	B	128	135	parallel
Strand 3	B	166	169	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	161	first strand
Strand 2	B	128	135	parallel
Strand 3	B	210	216	parallel
Strand 4	B	235	238	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	261	first strand
Strand 2	B	293	298	anti-parallel
Strand 3	B	270	275	parallel
Strand 4	B	335	340	parallel
Strand 5	B	361	366	parallel
Strand 6	B	374	380	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	56	first strand
Strand 2	C	83	86	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	169	first strand
Strand 2	C	129	135	parallel
Strand 3	C	210	216	parallel
Strand 4	C	235	237	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	293	298	anti-parallel
Strand 3	C	270	275	parallel
Strand 4	C	335	340	parallel
Strand 5	C	361	366	parallel
Strand 6	C	374	380	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	59	first strand
Strand 2	D	83	86	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	161	first strand
Strand 2	D	128	135	parallel
Strand 3	D	166	169	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	161	first strand
Strand 2	D	128	135	parallel
Strand 3	D	210	216	parallel
Strand 4	D	235	238	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	261	first strand
Strand 2	D	293	298	anti-parallel
Strand 3	D	270	275	parallel
Strand 4	D	335	340	parallel
Strand 5	D	361	366	parallel
Strand 6	D	374	380	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FMF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FMF