Analysis of interatomic Contacts of Structural Units in PDB entry:
8FML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FML entry

There are 2 chains in PDB entry 8FML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7GLU 1403
B
 MET 1ARG 495
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 8FML. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 18Right-handed 310
Helix 2
AA2
A
19 28Right-handed alpha
Helix 3
AA3
A
32 49Right-handed alpha
Helix 4
AA4
A
55 58Right-handed 310
Helix 5
AA5
A
59 66Right-handed alpha
Helix 6
AA6
A
77 84Right-handed alpha
Helix 7
AA7
A
112 121Right-handed alpha
Helix 8
AA8
A
124 129Right-handed 310
Helix 9
AA9
A
158 163Right-handed alpha
Helix 10
AB1
A
164 169Right-handed 310
Helix 11
AB2
A
170 174Right-handed 310
Helix 12
AB3
A
177 184Right-handed alpha
Helix 13
AB4
A
212 221Right-handed alpha
Helix 14
AB5
A
224 231Right-handed alpha
Helix 15
AB6
A
232 241Right-handed alpha
Helix 16
AB7
A
251 256Right-handed alpha
Helix 17
AB8
A
278 280Right-handed 310
Helix 18
AB9
A
281 286Right-handed alpha
Helix 19
AC1
A
344 349Right-handed alpha
Helix 20
AC2
A
397 412Right-handed alpha
Helix 21
AC3
A
413 418Right-handed alpha
Helix 22
AC4
A
424 428Right-handed 310
Helix 23
AC5
A
454 461Right-handed alpha
Helix 24
AC6
A
475 487Right-handed alpha
Helix 25
AC7
A
492 496Right-handed 310
Helix 26
AC8
A
507 509Right-handed 310
Helix 27
AC9
A
515 523Right-handed alpha
Helix 28
AD1
A
524 528Right-handed 310
Helix 29
AD2
A
537 542Right-handed alpha
Helix 30
AD3
A
586 591Right-handed alpha
Helix 31
AD4
A
603 615Right-handed alpha
Helix 32
AD5
A
618 632Right-handed alpha
Helix 33
AD6
A
633 639Right-handed 310
Helix 34
AD7
A
641 656Right-handed alpha
Helix 35
AD8
A
663 679Right-handed alpha
Helix 36
AD9
A
682 702Right-handed alpha
Helix 37
AE1
A
709 717Right-handed alpha
Helix 38
AE2
A
722 729Right-handed 310
Helix 39
AE3
A
747 762Right-handed alpha
Helix 40
AE4
A
765 778Right-handed alpha
Helix 41
AE5
A
781 787Right-handed alpha
Helix 42
AE6
A
789 799Right-handed alpha
Helix 43
AE7
A
803 815Right-handed alpha
Helix 44
AE8
A
821 826Right-handed 310
Helix 45
AE9
A
828 833Right-handed alpha
Helix 46
AF1
A
835 852Right-handed alpha
Helix 47
AF2
A
852 875Right-handed alpha
Helix 48
AF3
A
877 890Right-handed alpha
Helix 49
AF4
A
896 905Right-handed 310
Helix 50
AF5
A
907 913Right-handed 310
Helix 51
AF6
A
957 977Right-handed alpha
Helix 52
AF7
A
1013 1025Right-handed alpha
Helix 53
AF8
A
1039 1044Right-handed alpha
Helix 54
AF9
A
1044 1051Right-handed alpha
Helix 55
AG1
A
1066 1075Right-handed alpha
Helix 56
AG2
A
1143 1147Right-handed 310
Helix 57
AG3
A
1149 1153Right-handed 310
Helix 58
AG4
A
1169 1178Right-handed alpha
Helix 59
AG5
A
1221 1226Right-handed alpha
Helix 60
AG6
A
1248 1260Right-handed alpha
Helix 61
AG7
A
1280 1285Right-handed alpha
Helix 62
AG8
A
1309 1315Right-handed alpha
Helix 63
AG9
A
1337 1351Right-handed alpha
Helix 64
AH1
A
1368 1379Right-handed alpha
Helix 65
AH2
B
13 22Right-handed alpha
Helix 66
AH3
B
31 37Right-handed alpha
Helix 67
AH4
B
461 483Right-handed alpha
Helix 68
AH5
B
485 495Right-handed alpha
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There are 10 sheets in PDB entry 8FML. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
95 97anti-parallel
Strand 3
A
103 104anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 306first strand
Strand 2
A
313 314anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
450 452first strand
Strand 2
A
440 443anti-parallel
Strand 3
A
596 599anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 470first strand
Strand 2
A
576 582parallel
Strand 3
A
547 551parallel
Strand 4
A
502 505parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
730 733first strand
Strand 2
A
739 742anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
945 946first strand
Strand 2
A
1400 1401parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
954 956first strand
Strand 2
A
1393 1395parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
999 1001first strand
Strand 2
A
1027 1035parallel
Strand 3
A
1055 1061parallel
Strand 4
A
1083 1085parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1133 1134first strand
Strand 2
A
1159 1160parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1267 1268first strand
Strand 2
A
1296 1297parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il