Analysis of interatomic Contacts of Structural Units in PDB entry:
8FMV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FMV entry

There are 2 chains in PDB entry 8FMV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	MET 1	GLN 665
C	PHE 2	GLN 573

There are 50 helices in PDB entry 8FMV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	2	13	Right-handed alpha
Helix 2	AA2	D	14	46	Right-handed alpha
Helix 3	AA3	D	47	52	Right-handed 310
Helix 4	AA4	D	135	141	Right-handed alpha
Helix 5	AA5	D	142	194	Right-handed alpha
Helix 6	AA6	D	197	203	Right-handed alpha
Helix 7	AA7	D	205	214	Right-handed alpha
Helix 8	AA8	D	214	230	Right-handed alpha
Helix 9	AA9	D	230	249	Right-handed alpha
Helix 10	AB1	D	249	258	Right-handed alpha
Helix 11	AB2	D	259	297	Right-handed alpha
Helix 12	AB3	D	298	305	Right-handed alpha
Helix 13	AB4	D	307	336	Right-handed alpha
Helix 14	AB5	D	337	362	Right-handed alpha
Helix 15	AB6	D	368	383	Right-handed alpha
Helix 16	AB7	D	385	411	Right-handed alpha
Helix 17	AB8	D	468	477	Right-handed alpha
Helix 18	AB9	D	495	497	Right-handed 310
Helix 19	AC1	D	498	505	Right-handed alpha
Helix 20	AC2	D	519	526	Right-handed alpha
Helix 21	AC3	D	535	541	Right-handed alpha
Helix 22	AC4	D	559	563	Right-handed 310
Helix 23	AC5	D	568	584	Right-handed alpha
Helix 24	AC6	D	601	613	Right-handed alpha
Helix 25	AC7	D	647	654	Right-handed alpha
Helix 26	AC8	D	655	664	Right-handed alpha
Helix 27	AC9	C	3	8	Right-handed alpha
Helix 28	AD1	C	8	15	Right-handed alpha
Helix 29	AD2	C	16	34	Right-handed alpha
Helix 30	AD3	C	34	49	Right-handed alpha
Helix 31	AD4	C	53	103	Right-handed alpha
Helix 32	AD5	C	105	112	Right-handed alpha
Helix 33	AD6	C	113	123	Right-handed alpha
Helix 34	AD7	C	123	144	Right-handed alpha
Helix 35	AD8	C	144	157	Right-handed alpha
Helix 36	AD9	C	159	166	Right-handed alpha
Helix 37	AE1	C	167	207	Right-handed alpha
Helix 38	AE2	C	207	214	Right-handed alpha
Helix 39	AE3	C	216	243	Right-handed alpha
Helix 40	AE4	C	244	270	Right-handed alpha
Helix 41	AE5	C	274	315	Right-handed alpha
Helix 42	AE6	C	378	383	Right-handed alpha
Helix 43	AE7	C	406	413	Right-handed alpha
Helix 44	AE8	C	427	434	Right-handed alpha
Helix 45	AE9	C	442	451	Right-handed alpha
Helix 46	AF1	C	453	459	Right-handed alpha
Helix 47	AF2	C	476	491	Right-handed alpha
Helix 48	AF3	C	506	521	Right-handed alpha
Helix 49	AF4	C	532	537	Right-handed 310
Helix 50	AF5	C	555	562	Right-handed alpha

There are 7 sheets in PDB entry 8FMV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	56	first strand
Strand 2	D	71	74	anti-parallel
Strand 3	D	65	66	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	93	first strand
Strand 2	D	96	100	anti-parallel
Strand 3	D	127	132	anti-parallel
Strand 4	D	116	119	anti-parallel
Strand 5	D	110	111	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	452	453	first strand
Strand 2	D	430	433	anti-parallel
Strand 3	D	486	489	anti-parallel
Strand 4	D	492	493	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	435	437	first strand
Strand 2	D	446	449	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	506	509	first strand
Strand 2	D	587	590	parallel
Strand 3	D	617	620	parallel
Strand 4	D	459	462	parallel
Strand 5	D	633	637	parallel
Strand 6	D	642	644	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	361	first strand
Strand 2	C	337	342	anti-parallel
Strand 3	C	395	397	anti-parallel
Strand 4	C	400	401	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	414	417	first strand
Strand 2	C	495	499	parallel
Strand 3	C	525	529	parallel
Strand 4	C	366	370	parallel
Strand 5	C	541	546	parallel
Strand 6	C	549	554	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FMV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FMV