Analysis of interatomic Contacts of Structural Units in PDB entry:
8FMX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FMX entry

There are 3 chains in PDB entry 8FMX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 22	GLU 466
B	SER 22	GLU 466
C	SER 22	GLU 466

There are 54 helices in PDB entry 8FMX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	30	Right-handed alpha
Helix 2	AA2	A	67	94	Right-handed alpha
Helix 3	AA3	A	112	116	Right-handed alpha
Helix 4	AA4	A	120	141	Right-handed alpha
Helix 5	AA5	A	142	147	Right-handed alpha
Helix 6	AA6	A	168	178	Right-handed alpha
Helix 7	AA7	A	179	185	Right-handed 310
Helix 8	AA8	A	186	209	Right-handed alpha
Helix 9	AA9	A	209	215	Right-handed alpha
Helix 10	AB1	A	223	228	Right-handed alpha
Helix 11	AB2	A	229	231	Right-handed 310
Helix 12	AB3	A	233	242	Right-handed alpha
Helix 13	AB4	A	248	254	Right-handed alpha
Helix 14	AB5	A	322	326	Right-handed 310
Helix 15	AB6	A	344	351	Right-handed alpha
Helix 16	AB7	A	352	353	Right-handed 310
Helix 17	AB8	A	354	358	Right-handed 310
Helix 18	AB9	A	447	465	Right-handed alpha
Helix 19	AC1	B	24	30	Right-handed alpha
Helix 20	AC2	B	67	94	Right-handed alpha
Helix 21	AC3	B	112	116	Right-handed alpha
Helix 22	AC4	B	120	132	Right-handed alpha
Helix 23	AC5	B	132	141	Right-handed alpha
Helix 24	AC6	B	142	147	Right-handed alpha
Helix 25	AC7	B	168	178	Right-handed alpha
Helix 26	AC8	B	179	182	Right-handed 310
Helix 27	AC9	B	186	215	Right-handed alpha
Helix 28	AD1	B	223	228	Right-handed alpha
Helix 29	AD2	B	229	231	Right-handed 310
Helix 30	AD3	B	233	242	Right-handed alpha
Helix 31	AD4	B	248	254	Right-handed alpha
Helix 32	AD5	B	322	326	Right-handed 310
Helix 33	AD6	B	344	351	Right-handed alpha
Helix 34	AD7	B	352	353	Right-handed 310
Helix 35	AD8	B	354	358	Right-handed 310
Helix 36	AD9	B	447	465	Right-handed alpha
Helix 37	AE1	C	24	30	Right-handed alpha
Helix 38	AE2	C	67	94	Right-handed alpha
Helix 39	AE3	C	112	116	Right-handed alpha
Helix 40	AE4	C	120	132	Right-handed alpha
Helix 41	AE5	C	132	141	Right-handed alpha
Helix 42	AE6	C	142	147	Right-handed alpha
Helix 43	AE7	C	168	178	Right-handed alpha
Helix 44	AE8	C	179	182	Right-handed 310
Helix 45	AE9	C	186	215	Right-handed alpha
Helix 46	AF1	C	223	228	Right-handed alpha
Helix 47	AF2	C	229	231	Right-handed 310
Helix 48	AF3	C	233	242	Right-handed alpha
Helix 49	AF4	C	248	254	Right-handed alpha
Helix 50	AF5	C	322	326	Right-handed 310
Helix 51	AF6	C	344	351	Right-handed alpha
Helix 52	AF7	C	352	353	Right-handed 310
Helix 53	AF8	C	354	358	Right-handed 310
Helix 54	AF9	C	447	465	Right-handed alpha

There are 15 sheets in PDB entry 8FMX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	157	first strand
Strand 2	A	163	167	anti-parallel
Strand 3	A	33	55	parallel
Strand 4	A	270	293	anti-parallel
Strand 5	A	310	314	anti-parallel
Strand 6	A	317	319	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	258	265	anti-parallel
Strand 3	A	270	293	anti-parallel
Strand 4	A	33	55	anti-parallel
Strand 5	A	332	335	parallel
Strand 6	A	327	328	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	108	111	anti-parallel
Strand 3	C	420	423	parallel
Strand 4	C	414	417	anti-parallel
Strand 5	C	387	389	anti-parallel
Strand 6	C	394	395	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	C	371	374	anti-parallel
Strand 3	C	377	380	anti-parallel
Strand 4	C	405	407	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	298	first strand
Strand 2	A	301	305	anti-parallel
Strand 3	A	360	362	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	407	first strand
Strand 2	A	377	380	anti-parallel
Strand 3	A	371	374	anti-parallel
Strand 4	B	118	119	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	395	first strand
Strand 2	A	387	389	anti-parallel
Strand 3	A	414	417	anti-parallel
Strand 4	A	420	423	anti-parallel
Strand 5	B	108	111	parallel
Strand 6	B	96	98	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	157	first strand
Strand 2	B	163	167	anti-parallel
Strand 3	B	33	55	parallel
Strand 4	B	270	293	anti-parallel
Strand 5	B	310	314	anti-parallel
Strand 6	B	317	319	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	222	first strand
Strand 2	B	258	265	anti-parallel
Strand 3	B	270	293	anti-parallel
Strand 4	B	33	55	anti-parallel
Strand 5	B	332	335	parallel
Strand 6	B	327	328	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	298	first strand
Strand 2	B	301	305	anti-parallel
Strand 3	B	360	362	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	407	first strand
Strand 2	B	377	380	anti-parallel
Strand 3	B	371	374	anti-parallel
Strand 4	C	118	119	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	395	first strand
Strand 2	B	387	389	anti-parallel
Strand 3	B	414	417	anti-parallel
Strand 4	B	420	423	anti-parallel
Strand 5	C	108	111	parallel
Strand 6	C	96	98	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	157	first strand
Strand 2	C	163	167	anti-parallel
Strand 3	C	33	55	parallel
Strand 4	C	270	293	anti-parallel
Strand 5	C	310	314	anti-parallel
Strand 6	C	317	320	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	222	first strand
Strand 2	C	258	265	anti-parallel
Strand 3	C	270	293	anti-parallel
Strand 4	C	33	55	anti-parallel
Strand 5	C	332	335	parallel
Strand 6	C	327	328	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	298	first strand
Strand 2	C	301	305	anti-parallel
Strand 3	C	360	362	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FMX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FMX