Analysis of interatomic Contacts of Structural Units in PDB entry:
8FMY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FMY entry

There are 3 chains in PDB entry 8FMY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 26	GLY 445
B	SER 26	GLY 445
C	SER 26	GLY 445

There are 51 helices in PDB entry 8FMY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	33	Right-handed alpha
Helix 2	AA2	A	67	70	Right-handed 310
Helix 3	AA3	A	71	105	Right-handed alpha
Helix 4	AA4	A	116	120	Right-handed alpha
Helix 5	AA5	A	124	136	Right-handed alpha
Helix 6	AA6	A	136	145	Right-handed alpha
Helix 7	AA7	A	146	152	Right-handed alpha
Helix 8	AA8	A	172	182	Right-handed alpha
Helix 9	AA9	A	183	186	Right-handed 310
Helix 10	AB1	A	190	219	Right-handed alpha
Helix 11	AB2	A	227	231	Right-handed alpha
Helix 12	AB3	A	232	235	Right-handed 310
Helix 13	AB4	A	237	245	Right-handed alpha
Helix 14	AB5	A	252	258	Right-handed alpha
Helix 15	AB6	A	327	330	Right-handed 310
Helix 16	AB7	A	348	356	Right-handed alpha
Helix 17	AB8	A	358	362	Right-handed 310
Helix 18	AB9	B	28	33	Right-handed alpha
Helix 19	AC1	B	67	70	Right-handed 310
Helix 20	AC2	B	71	105	Right-handed alpha
Helix 21	AC3	B	116	120	Right-handed alpha
Helix 22	AC4	B	124	136	Right-handed alpha
Helix 23	AC5	B	136	145	Right-handed alpha
Helix 24	AC6	B	146	152	Right-handed alpha
Helix 25	AC7	B	172	182	Right-handed alpha
Helix 26	AC8	B	183	186	Right-handed 310
Helix 27	AC9	B	190	219	Right-handed alpha
Helix 28	AD1	B	227	231	Right-handed alpha
Helix 29	AD2	B	232	235	Right-handed 310
Helix 30	AD3	B	237	245	Right-handed alpha
Helix 31	AD4	B	252	258	Right-handed alpha
Helix 32	AD5	B	327	330	Right-handed 310
Helix 33	AD6	B	348	356	Right-handed alpha
Helix 34	AD7	B	358	362	Right-handed 310
Helix 35	AD8	C	28	33	Right-handed alpha
Helix 36	AD9	C	67	70	Right-handed 310
Helix 37	AE1	C	71	105	Right-handed alpha
Helix 38	AE2	C	116	120	Right-handed alpha
Helix 39	AE3	C	124	136	Right-handed alpha
Helix 40	AE4	C	136	145	Right-handed alpha
Helix 41	AE5	C	146	152	Right-handed alpha
Helix 42	AE6	C	172	182	Right-handed alpha
Helix 43	AE7	C	183	186	Right-handed 310
Helix 44	AE8	C	190	219	Right-handed alpha
Helix 45	AE9	C	227	231	Right-handed alpha
Helix 46	AF1	C	232	235	Right-handed 310
Helix 47	AF2	C	237	245	Right-handed alpha
Helix 48	AF3	C	252	258	Right-handed alpha
Helix 49	AF4	C	327	330	Right-handed 310
Helix 50	AF5	C	348	356	Right-handed alpha
Helix 51	AF6	C	358	362	Right-handed 310

There are 15 sheets in PDB entry 8FMY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	332	first strand
Strand 2	A	336	339	anti-parallel
Strand 3	A	37	48	parallel
Strand 4	A	284	297	anti-parallel
Strand 5	A	314	318	anti-parallel
Strand 6	A	321	325	anti-parallel
Strand 7	A	344	345	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	161	first strand
Strand 2	A	167	171	anti-parallel
Strand 3	A	53	59	parallel
Strand 4	A	274	280	anti-parallel
Strand 5	A	262	269	anti-parallel
Strand 6	A	225	226	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	115	first strand
Strand 2	C	424	427	parallel
Strand 3	C	418	421	anti-parallel
Strand 4	C	391	393	anti-parallel
Strand 5	C	398	399	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	123	first strand
Strand 2	C	375	378	anti-parallel
Strand 3	C	381	384	anti-parallel
Strand 4	C	409	411	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	302	first strand
Strand 2	A	305	309	anti-parallel
Strand 3	A	364	366	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	411	first strand
Strand 2	A	381	384	anti-parallel
Strand 3	A	375	378	anti-parallel
Strand 4	B	121	123	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	399	first strand
Strand 2	A	391	393	anti-parallel
Strand 3	A	418	421	anti-parallel
Strand 4	A	424	427	anti-parallel
Strand 5	B	113	115	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	332	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	37	48	parallel
Strand 4	B	284	297	anti-parallel
Strand 5	B	314	318	anti-parallel
Strand 6	B	321	325	anti-parallel
Strand 7	B	344	345	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	161	first strand
Strand 2	B	167	171	anti-parallel
Strand 3	B	53	59	parallel
Strand 4	B	274	280	anti-parallel
Strand 5	B	262	269	anti-parallel
Strand 6	B	225	226	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	302	first strand
Strand 2	B	305	309	anti-parallel
Strand 3	B	364	366	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	411	first strand
Strand 2	B	381	384	anti-parallel
Strand 3	B	375	378	anti-parallel
Strand 4	C	121	123	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	399	first strand
Strand 2	B	391	393	anti-parallel
Strand 3	B	418	421	anti-parallel
Strand 4	B	424	427	anti-parallel
Strand 5	C	113	115	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	332	first strand
Strand 2	C	336	339	anti-parallel
Strand 3	C	37	48	parallel
Strand 4	C	284	297	anti-parallel
Strand 5	C	314	318	anti-parallel
Strand 6	C	321	325	anti-parallel
Strand 7	C	344	345	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	161	first strand
Strand 2	C	167	171	anti-parallel
Strand 3	C	53	59	parallel
Strand 4	C	274	280	anti-parallel
Strand 5	C	262	269	anti-parallel
Strand 6	C	225	226	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	302	first strand
Strand 2	C	305	309	anti-parallel
Strand 3	C	364	366	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FMY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FMY