Analysis of interatomic Contacts of Structural Units in PDB entry:
8FMZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FMZ entry

There are 6 chains in PDB entry 8FMZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 VAL 5VAL 246
C
 GLU 3ASN 340
D
 GLN 11PHE 61
E
 VAL 2LEU 235
A
 ASN 52PHE 376
F
 ARG 8LEU 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8FMZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
6 31Right-handed alpha
Helix 2
AA2
B
45 49Right-handed 310
Helix 3
AA3
B
94 101Right-handed 310
Helix 4
AA4
B
117 130Right-handed alpha
Helix 5
AA5
B
131 135Right-handed 310
Helix 6
AA6
B
145 156Right-handed alpha
Helix 7
AA7
B
159 163Right-handed 310
Helix 8
AA8
B
164 170Right-handed 310
Helix 9
AA9
B
183 204Right-handed alpha
Helix 10
AB1
B
222 243Right-handed alpha
Helix 11
AB2
C
4 25Right-handed alpha
Helix 12
AB3
C
29 37Right-handed 310
Helix 13
AB4
C
128 132Right-handed 310
Helix 14
AB5
D
12 24Right-handed alpha
Helix 15
AB6
D
29 44Right-handed alpha
Helix 16
AB7
D
45 48Right-handed 310
Helix 17
AB8
E
28 32Right-handed 310
Helix 18
AB9
E
53 56Right-handed 310
Helix 19
AC1
E
87 91Right-handed 310
Helix 20
AC2
A
52 56Right-handed 310
Helix 21
AC3
A
63 90Right-handed alpha
Helix 22
AC4
A
101 128Right-handed alpha
Helix 23
AC5
A
137 173Right-handed alpha
Helix 24
AC6
A
173 181Right-handed alpha
Helix 25
AC7
A
182 201Right-handed alpha
Helix 26
AC8
A
201 206Right-handed alpha
Helix 27
AC9
A
219 221Right-handed 310
Helix 28
AD1
A
230 246Right-handed alpha
Helix 29
AD2
A
246 266Right-handed alpha
Helix 30
AD3
A
304 334Right-handed alpha
Helix 31
AD4
A
340 370Right-handed alpha
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There are 14 sheets in PDB entry 8FMZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 76first strand
Strand 2
B
79 86anti-parallel
Strand 3
B
33 40parallel
Strand 4
B
105 111parallel
Strand 5
B
138 144parallel
Strand 6
B
211 215parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 51first strand
Strand 2
C
336 339anti-parallel
Strand 3
C
327 331anti-parallel
Strand 4
C
315 320anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 63first strand
Strand 2
C
69 74anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
88 94anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 105first strand
Strand 2
C
111 116anti-parallel
Strand 3
C
121 125anti-parallel
Strand 4
C
134 139anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
146 151first strand
Strand 2
C
156 161anti-parallel
Strand 3
C
166 170anti-parallel
Strand 4
C
175 180anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
187 192first strand
Strand 2
C
198 203anti-parallel
Strand 3
C
208 212anti-parallel
Strand 4
C
218 222anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 234first strand
Strand 2
C
240 245anti-parallel
Strand 3
C
250 254anti-parallel
Strand 4
C
259 264anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
273 278first strand
Strand 2
C
284 289anti-parallel
Strand 3
C
294 298anti-parallel
Strand 4
C
304 308anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
17 25anti-parallel
Strand 3
E
78 84anti-parallel
Strand 4
E
68 73anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 12first strand
Strand 2
E
115 119parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
33 39anti-parallel
Strand 5
E
45 51anti-parallel
Strand 6
E
58 60anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 12first strand
Strand 2
E
115 119parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
110 111anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
128 130first strand
Strand 2
E
143 149anti-parallel
Strand 3
E
199 204anti-parallel
Strand 4
E
191 196anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
134 136first strand
Strand 2
E
231 234parallel
Strand 3
E
214 219anti-parallel
Strand 4
E
162 167anti-parallel
Strand 5
E
174 178anti-parallel
Strand 6
E
182 183anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 212first strand
Strand 2
A
223 227anti-parallel
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