Analysis of interatomic Contacts of Structural Units in PDB entry:
8FN4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FN4 entry

There are 6 chains in PDB entry 8FN4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	GLY 122	LEU 473
2	ASP 45	LEU 474
3	ASN 3	LYS 482
4	THR 336	LEU 1085
5	LEU 11	LYS 286
6	VAL 58	SER 509

There are134 helices in PDB entry 8FN4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	201	217	Right-handed alpha
Helix 2	AA2	1	234	237	Right-handed 310
Helix 3	AA3	1	245	253	Right-handed alpha
Helix 4	AA4	1	277	283	Right-handed alpha
Helix 5	AA5	1	349	359	Right-handed alpha
Helix 6	AA6	1	442	459	Right-handed alpha
Helix 7	AA7	1	459	464	Right-handed alpha
Helix 8	AA8	2	50	59	Right-handed alpha
Helix 9	AA9	2	60	61	Right-handed 310
Helix 10	AB1	2	62	66	Right-handed 310
Helix 11	AB2	2	67	78	Right-handed alpha
Helix 12	AB3	2	89	106	Right-handed alpha
Helix 13	AB4	2	212	234	Right-handed alpha
Helix 14	AB5	2	264	274	Right-handed alpha
Helix 15	AB6	2	284	286	Right-handed 310
Helix 16	AB7	2	287	298	Right-handed alpha
Helix 17	AB8	2	365	373	Right-handed alpha
Helix 18	AB9	2	456	473	Right-handed alpha
Helix 19	AC1	3	4	19	Right-handed alpha
Helix 20	AC2	3	24	34	Right-handed alpha
Helix 21	AC3	3	38	62	Right-handed alpha
Helix 22	AC4	3	65	76	Right-handed alpha
Helix 23	AC5	3	91	101	Right-handed alpha
Helix 24	AC6	3	106	119	Right-handed alpha
Helix 25	AC7	3	124	134	Right-handed alpha
Helix 26	AC8	3	142	158	Right-handed alpha
Helix 27	AC9	3	159	161	Right-handed 310
Helix 28	AD1	3	162	176	Right-handed alpha
Helix 29	AD2	3	182	194	Right-handed alpha
Helix 30	AD3	3	199	212	Right-handed alpha
Helix 31	AD4	3	214	225	Right-handed alpha
Helix 32	AD5	3	225	236	Right-handed alpha
Helix 33	AD6	3	238	257	Right-handed alpha
Helix 34	AD7	3	260	274	Right-handed alpha
Helix 35	AD8	3	279	291	Right-handed alpha
Helix 36	AD9	3	297	308	Right-handed alpha
Helix 37	AE1	3	319	335	Right-handed alpha
Helix 38	AE2	3	340	352	Right-handed alpha
Helix 39	AE3	3	357	371	Right-handed alpha
Helix 40	AE4	3	372	373	Right-handed 310
Helix 41	AE5	3	374	376	Right-handed 310
Helix 42	AE6	3	377	385	Right-handed alpha
Helix 43	AE7	3	387	396	Right-handed alpha
Helix 44	AE8	3	399	414	Right-handed alpha
Helix 45	AE9	3	418	435	Right-handed alpha
Helix 46	AF1	3	440	457	Right-handed alpha
Helix 47	AF2	3	462	480	Right-handed alpha
Helix 48	AF3	4	337	347	Right-handed alpha
Helix 49	AF4	4	351	360	Right-handed alpha
Helix 50	AF5	4	367	381	Right-handed alpha
Helix 51	AF6	4	385	395	Right-handed alpha
Helix 52	AF7	4	400	414	Right-handed alpha
Helix 53	AF8	4	419	426	Right-handed alpha
Helix 54	AF9	4	439	450	Right-handed alpha
Helix 55	AG1	4	468	487	Right-handed alpha
Helix 56	AG2	4	490	501	Right-handed alpha
Helix 57	AG3	4	509	522	Right-handed alpha
Helix 58	AG4	4	525	539	Right-handed alpha
Helix 59	AG5	4	543	564	Right-handed alpha
Helix 60	AG6	4	572	590	Right-handed alpha
Helix 61	AG7	4	594	608	Right-handed alpha
Helix 62	AG8	4	613	615	Right-handed 310
Helix 63	AG9	4	616	626	Right-handed alpha
Helix 64	AH1	4	629	633	Right-handed 310
Helix 65	AH2	4	643	647	Right-handed 310
Helix 66	AH3	4	648	661	Right-handed alpha
Helix 67	AH4	4	662	666	Right-handed 310
Helix 68	AH5	4	667	684	Right-handed alpha
Helix 69	AH6	4	689	704	Right-handed alpha
Helix 70	AH7	4	711	720	Right-handed alpha
Helix 71	AH8	4	721	725	Right-handed 310
Helix 72	AH9	4	726	737	Right-handed alpha
Helix 73	AI1	4	738	740	Right-handed 310
Helix 74	AI2	4	744	751	Right-handed alpha
Helix 75	AI3	4	762	781	Right-handed alpha
Helix 76	AI4	4	783	799	Right-handed alpha
Helix 77	AI5	4	805	818	Right-handed alpha
Helix 78	AI6	4	824	833	Right-handed alpha
Helix 79	AI7	4	848	856	Right-handed alpha
Helix 80	AI8	4	862	876	Right-handed alpha
Helix 81	AI9	4	877	880	Right-handed 310
Helix 82	AJ1	4	884	893	Right-handed alpha
Helix 83	AJ2	4	899	913	Right-handed alpha
Helix 84	AJ3	4	918	933	Right-handed alpha
Helix 85	AJ4	4	936	950	Right-handed alpha
Helix 86	AJ5	4	951	954	Right-handed 310
Helix 87	AJ6	4	957	969	Right-handed alpha
Helix 88	AJ7	4	978	990	Right-handed alpha
Helix 89	AJ8	4	995	1009	Right-handed alpha
Helix 90	AJ9	4	1013	1030	Right-handed alpha
Helix 91	AK1	4	1034	1048	Right-handed alpha
Helix 92	AK2	4	1052	1064	Right-handed alpha
Helix 93	AK3	4	1074	1085	Right-handed alpha
Helix 94	AK4	5	34	51	Right-handed alpha
Helix 95	AK5	5	67	71	Right-handed 310
Helix 96	AK6	5	91	93	Right-handed 310
Helix 97	AK7	5	94	107	Right-handed alpha
Helix 98	AK8	5	115	120	Right-handed alpha
Helix 99	AK9	5	147	159	Right-handed alpha
Helix 100	AL1	5	180	185	Right-handed alpha
Helix 101	AL2	5	198	210	Right-handed alpha
Helix 102	AL3	5	212	216	Right-handed 310
Helix 103	AL4	5	246	255	Right-handed alpha
Helix 104	AL5	5	265	272	Right-handed alpha
Helix 105	AL6	5	274	278	Right-handed 310
Helix 106	AL7	6	62	81	Right-handed alpha
Helix 107	AL8	6	83	97	Right-handed alpha
Helix 108	AL9	6	105	108	Right-handed 310
Helix 109	AM1	6	109	119	Right-handed alpha
Helix 110	AM2	6	125	133	Right-handed alpha
Helix 111	AM3	6	146	154	Right-handed alpha
Helix 112	AM4	6	163	174	Right-handed alpha
Helix 113	AM5	6	181	196	Right-handed alpha
Helix 114	AM6	6	199	216	Right-handed alpha
Helix 115	AM7	6	222	235	Right-handed alpha
Helix 116	AM8	6	238	252	Right-handed alpha
Helix 117	AM9	6	257	270	Right-handed alpha
Helix 118	AN1	6	276	290	Right-handed alpha
Helix 119	AN2	6	291	293	Right-handed 310
Helix 120	AN3	6	294	309	Right-handed alpha
Helix 121	AN4	6	312	326	Right-handed alpha
Helix 122	AN5	6	334	346	Right-handed alpha
Helix 123	AN6	6	350	363	Right-handed alpha
Helix 124	AN7	6	368	379	Right-handed alpha
Helix 125	AN8	6	386	400	Right-handed alpha
Helix 126	AN9	6	405	419	Right-handed alpha
Helix 127	AO1	6	423	434	Right-handed alpha
Helix 128	AO2	6	435	441	Right-handed 310
Helix 129	AO3	6	442	456	Right-handed alpha
Helix 130	AO4	6	460	474	Right-handed alpha
Helix 131	AO5	6	474	480	Right-handed alpha
Helix 132	AO6	6	481	483	Right-handed 310
Helix 133	AO7	6	484	496	Right-handed alpha
Helix 134	AO8	6	500	509	Right-handed alpha

There are 11 sheets in PDB entry 8FN4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	156	158	first strand
Strand 2	1	323	330	parallel
Strand 3	1	337	344	anti-parallel
Strand 4	1	221	232	anti-parallel
Strand 5	1	259	262	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	156	158	first strand
Strand 2	1	323	330	parallel
Strand 3	1	337	344	anti-parallel
Strand 4	1	221	232	anti-parallel
Strand 5	1	422	428	anti-parallel
Strand 6	1	402	412	anti-parallel
Strand 7	1	379	391	anti-parallel
Strand 8	1	293	299	anti-parallel
Strand 9	1	304	310	anti-parallel
Strand 10	1	315	320	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	362	363	first strand
Strand 2	1	370	371	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	178	179	first strand
Strand 2	2	338	347	parallel
Strand 3	2	353	361	anti-parallel
Strand 4	2	239	250	anti-parallel
Strand 5	2	277	280	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	178	179	first strand
Strand 2	2	338	347	parallel
Strand 3	2	353	361	anti-parallel
Strand 4	2	239	250	anti-parallel
Strand 5	2	438	446	anti-parallel
Strand 6	2	416	428	anti-parallel
Strand 7	2	398	410	anti-parallel
Strand 8	2	301	314	anti-parallel
Strand 9	2	321	325	anti-parallel
Strand 10	2	331	335	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	190	191	first strand
Strand 2	2	205	206	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	57	61	first strand
Strand 2	5	12	16	parallel
Strand 3	5	280	282	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	76	78	first strand
Strand 2	5	83	85	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	131	134	first strand
Strand 2	5	137	142	anti-parallel
Strand 3	5	168	173	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	192	196	first strand
Strand 2	5	218	222	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	228	229	first strand
Strand 2	5	239	243	anti-parallel
Strand 3	5	259	263	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FN4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FN4