Analysis of interatomic Contacts of Structural Units in PDB entry:
8FN5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FN5 entry

There are 2 chains in PDB entry 8FN5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 423	ASN 1054
B	ALA 423	ASN 1054

There are 58 helices in PDB entry 8FN5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	430	446	Right-handed alpha
Helix 2	AA2	A	446	452	Right-handed alpha
Helix 3	AA3	A	454	458	Right-handed 310
Helix 4	AA4	A	468	471	Right-handed 310
Helix 5	AA5	A	472	487	Right-handed alpha
Helix 6	AA6	A	491	497	Right-handed alpha
Helix 7	AA7	A	508	516	Right-handed alpha
Helix 8	AA8	A	524	536	Right-handed alpha
Helix 9	AA9	A	545	549	Right-handed 310
Helix 10	AB1	A	553	559	Right-handed alpha
Helix 11	AB2	A	587	599	Right-handed alpha
Helix 12	AB3	A	609	625	Right-handed alpha
Helix 13	AB4	A	635	646	Right-handed alpha
Helix 14	AB5	A	655	659	Right-handed alpha
Helix 15	AB6	A	672	687	Right-handed alpha
Helix 16	AB7	A	730	734	Right-handed 310
Helix 17	AB8	A	761	765	Right-handed 310
Helix 18	AB9	A	786	790	Right-handed 310
Helix 19	AC1	A	853	858	Right-handed alpha
Helix 20	AC2	A	874	877	Right-handed 310
Helix 21	AC3	A	878	886	Right-handed alpha
Helix 22	AC4	A	886	893	Right-handed alpha
Helix 23	AC5	A	911	916	Right-handed alpha
Helix 24	AC6	A	939	953	Right-handed alpha
Helix 25	AC7	A	1007	1013	Right-handed alpha
Helix 26	AC8	A	1016	1024	Right-handed alpha
Helix 27	AC9	A	1024	1030	Right-handed alpha
Helix 28	AD1	A	1049	1053	Right-handed 310
Helix 29	AD2	B	430	446	Right-handed alpha
Helix 30	AD3	B	446	452	Right-handed alpha
Helix 31	AD4	B	454	458	Right-handed 310
Helix 32	AD5	B	468	471	Right-handed 310
Helix 33	AD6	B	472	487	Right-handed alpha
Helix 34	AD7	B	491	497	Right-handed alpha
Helix 35	AD8	B	508	516	Right-handed alpha
Helix 36	AD9	B	524	536	Right-handed alpha
Helix 37	AE1	B	539	543	Right-handed 310
Helix 38	AE2	B	545	549	Right-handed 310
Helix 39	AE3	B	554	559	Right-handed alpha
Helix 40	AE4	B	587	599	Right-handed alpha
Helix 41	AE5	B	609	625	Right-handed alpha
Helix 42	AE6	B	635	646	Right-handed alpha
Helix 43	AE7	B	655	659	Right-handed alpha
Helix 44	AE8	B	672	687	Right-handed alpha
Helix 45	AE9	B	701	705	Right-handed 310
Helix 46	AF1	B	730	736	Right-handed 310
Helix 47	AF2	B	761	765	Right-handed 310
Helix 48	AF3	B	786	790	Right-handed 310
Helix 49	AF4	B	853	858	Right-handed alpha
Helix 50	AF5	B	874	877	Right-handed 310
Helix 51	AF6	B	878	886	Right-handed alpha
Helix 52	AF7	B	886	893	Right-handed alpha
Helix 53	AF8	B	911	916	Right-handed alpha
Helix 54	AF9	B	939	953	Right-handed alpha
Helix 55	AG1	B	1007	1013	Right-handed alpha
Helix 56	AG2	B	1016	1024	Right-handed alpha
Helix 57	AG3	B	1024	1030	Right-handed alpha
Helix 58	AG4	B	1049	1053	Right-handed 310

There are 10 sheets in PDB entry 8FN5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	425	first strand
Strand 2	A	965	966	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	501	502	first strand
Strand 2	A	461	464	parallel
Strand 3	A	956	961	parallel
Strand 4	A	897	899	parallel
Strand 5	A	861	863	parallel
Strand 6	A	650	654	parallel
Strand 7	A	577	578	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	691	697	first strand
Strand 2	A	711	717	anti-parallel
Strand 3	A	738	743	anti-parallel
Strand 4	A	818	826	anti-parallel
Strand 5	A	768	775	anti-parallel
Strand 6	A	794	795	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	780	782	first strand
Strand 2	A	768	775	anti-parallel
Strand 3	A	818	826	anti-parallel
Strand 4	A	812	813	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	756	759	first strand
Strand 2	A	801	804	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	425	first strand
Strand 2	B	965	966	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	501	502	first strand
Strand 2	B	461	464	parallel
Strand 3	B	956	961	parallel
Strand 4	B	897	899	parallel
Strand 5	B	861	863	parallel
Strand 6	B	650	654	parallel
Strand 7	B	577	578	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	691	697	first strand
Strand 2	B	711	717	anti-parallel
Strand 3	B	738	743	anti-parallel
Strand 4	B	818	826	anti-parallel
Strand 5	B	768	775	anti-parallel
Strand 6	B	794	795	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	780	782	first strand
Strand 2	B	768	775	anti-parallel
Strand 3	B	818	826	anti-parallel
Strand 4	B	812	813	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	756	759	first strand
Strand 2	B	801	804	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FN5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FN5