Analysis of interatomic Contacts of Structural Units in PDB entry:
8FN9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FN9 entry

There are 8 chains in PDB entry 8FN9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 1130	MET 1348
B	SER 309	PRO 409
C	ARG 1130	MET 1348
D	VAL 310	PRO 409
E	GLY 1129	TYR 1343
F	GLY 308	THR 410
G	GLY 1129	TYR 1343
H	VAL 310	GLN 351

There are 37 helices in PDB entry 8FN9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1137	1145	Right-handed alpha
Helix 2	AA2	A	1157	1161	Right-handed 310
Helix 3	AA3	A	1171	1175	Right-handed 310
Helix 4	AA4	A	1193	1200	Right-handed alpha
Helix 5	AA5	A	1211	1220	Right-handed alpha
Helix 6	AA6	A	1248	1252	Right-handed 310
Helix 7	AA7	A	1268	1272	Right-handed 310
Helix 8	AA8	A	1289	1294	Right-handed alpha
Helix 9	AA9	A	1323	1328	Right-handed alpha
Helix 10	AB1	A	1344	1348	Right-handed 310
Helix 11	AB2	C	1137	1144	Right-handed alpha
Helix 12	AB3	C	1157	1161	Right-handed 310
Helix 13	AB4	C	1171	1175	Right-handed 310
Helix 14	AB5	C	1193	1200	Right-handed alpha
Helix 15	AB6	C	1211	1220	Right-handed alpha
Helix 16	AB7	C	1268	1272	Right-handed 310
Helix 17	AB8	C	1289	1294	Right-handed alpha
Helix 18	AB9	C	1323	1328	Right-handed alpha
Helix 19	AC1	C	1344	1348	Right-handed 310
Helix 20	AC2	E	1137	1144	Right-handed alpha
Helix 21	AC3	E	1157	1161	Right-handed 310
Helix 22	AC4	E	1171	1175	Right-handed 310
Helix 23	AC5	E	1193	1200	Right-handed alpha
Helix 24	AC6	E	1211	1220	Right-handed alpha
Helix 25	AC7	E	1248	1252	Right-handed 310
Helix 26	AC8	E	1268	1272	Right-handed 310
Helix 27	AC9	E	1289	1294	Right-handed alpha
Helix 28	AD1	E	1323	1328	Right-handed alpha
Helix 29	AD2	G	1137	1144	Right-handed alpha
Helix 30	AD3	G	1157	1161	Right-handed 310
Helix 31	AD4	G	1171	1175	Right-handed 310
Helix 32	AD5	G	1193	1200	Right-handed alpha
Helix 33	AD6	G	1211	1220	Right-handed alpha
Helix 34	AD7	G	1248	1252	Right-handed 310
Helix 35	AD8	G	1268	1272	Right-handed 310
Helix 36	AD9	G	1289	1294	Right-handed alpha
Helix 37	AE1	G	1323	1328	Right-handed alpha

There are 16 sheets in PDB entry 8FN9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1150	1155	first strand
Strand 2	A	1163	1169	anti-parallel
Strand 3	A	1177	1183	anti-parallel
Strand 4	A	1335	1342	anti-parallel
Strand 5	A	1224	1232	anti-parallel
Strand 6	A	1235	1246	anti-parallel
Strand 7	A	1255	1257	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1201	1202	first strand
Strand 2	A	1208	1209	anti-parallel
Strand 3	A	1177	1183	anti-parallel
Strand 4	A	1335	1342	anti-parallel
Strand 5	A	1224	1232	anti-parallel
Strand 6	A	1235	1246	anti-parallel
Strand 7	A	1260	1262	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	319	first strand
Strand 2	B	328	333	anti-parallel
Strand 3	B	372	375	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	364	first strand
Strand 2	B	343	352	anti-parallel
Strand 3	B	384	392	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1150	1155	first strand
Strand 2	C	1163	1169	anti-parallel
Strand 3	C	1177	1183	anti-parallel
Strand 4	C	1335	1342	anti-parallel
Strand 5	C	1224	1232	anti-parallel
Strand 6	C	1235	1246	anti-parallel
Strand 7	C	1255	1257	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1201	1202	first strand
Strand 2	C	1208	1209	anti-parallel
Strand 3	C	1177	1183	anti-parallel
Strand 4	C	1335	1342	anti-parallel
Strand 5	C	1224	1232	anti-parallel
Strand 6	C	1235	1246	anti-parallel
Strand 7	C	1260	1262	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	316	324	first strand
Strand 2	D	327	333	anti-parallel
Strand 3	D	372	375	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	361	364	first strand
Strand 2	D	343	352	anti-parallel
Strand 3	D	383	392	anti-parallel
Strand 4	D	404	407	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1150	1155	first strand
Strand 2	E	1163	1169	anti-parallel
Strand 3	E	1177	1183	anti-parallel
Strand 4	E	1335	1342	anti-parallel
Strand 5	E	1224	1232	anti-parallel
Strand 6	E	1235	1246	anti-parallel
Strand 7	E	1255	1257	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1201	1202	first strand
Strand 2	E	1208	1209	anti-parallel
Strand 3	E	1177	1183	anti-parallel
Strand 4	E	1335	1342	anti-parallel
Strand 5	E	1224	1232	anti-parallel
Strand 6	E	1235	1246	anti-parallel
Strand 7	E	1260	1262	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	316	322	first strand
Strand 2	F	328	333	anti-parallel
Strand 3	F	372	375	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	360	364	first strand
Strand 2	F	343	352	anti-parallel
Strand 3	F	383	392	anti-parallel
Strand 4	F	404	407	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1150	1155	first strand
Strand 2	G	1163	1169	anti-parallel
Strand 3	G	1177	1183	anti-parallel
Strand 4	G	1335	1342	anti-parallel
Strand 5	G	1224	1232	anti-parallel
Strand 6	G	1235	1246	anti-parallel
Strand 7	G	1255	1257	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1201	1202	first strand
Strand 2	G	1208	1209	anti-parallel
Strand 3	G	1177	1183	anti-parallel
Strand 4	G	1335	1342	anti-parallel
Strand 5	G	1224	1232	anti-parallel
Strand 6	G	1235	1246	anti-parallel
Strand 7	G	1260	1262	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	316	322	first strand
Strand 2	H	328	333	anti-parallel
Strand 3	H	372	375	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	361	364	first strand
Strand 2	H	343	352	anti-parallel
Strand 3	H	383	392	anti-parallel
Strand 4	H	404	407	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FN9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FN9