Analysis of interatomic Contacts of Structural Units in PDB entry:
8FND

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FND entry

There are 12 chains in PDB entry 8FND (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	ILE 268
B	LEU 2	ASP 270
C	GLU 212	GLY 277
D	ASN 222	ILE 268
E	A 15	G 33
F	C 5	DA 21
G	PHE 1	ILE 268
H	LEU 2	ASP 270
I	GLU 212	GLY 277
J	ASN 222	ILE 268
K	A 15	G 33
L	C 5	DA 21

There are 44 helices in PDB entry 8FND. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	10	Right-handed alpha
Helix 2	AA2	A	22	27	Right-handed alpha
Helix 3	AA3	A	29	39	Right-handed alpha
Helix 4	AA4	A	40	44	Right-handed 310
Helix 5	AA5	A	93	108	Right-handed alpha
Helix 6	AA6	A	124	132	Right-handed alpha
Helix 7	AA7	A	148	165	Right-handed alpha
Helix 8	AA8	A	166	169	Right-handed 310
Helix 9	AA9	A	171	187	Right-handed alpha
Helix 10	AB1	A	195	221	Right-handed alpha
Helix 11	AB2	B	4	16	Right-handed alpha
Helix 12	AB3	B	18	26	Right-handed alpha
Helix 13	AB4	B	29	39	Right-handed alpha
Helix 14	AB5	B	93	108	Right-handed alpha
Helix 15	AB6	B	123	134	Right-handed alpha
Helix 16	AB7	B	150	166	Right-handed alpha
Helix 17	AB8	B	167	169	Right-handed 310
Helix 18	AB9	B	171	186	Right-handed alpha
Helix 19	AC1	B	195	221	Right-handed alpha
Helix 20	AC2	B	261	263	Right-handed 310
Helix 21	AC3	C	213	221	Right-handed alpha
Helix 22	AC4	C	270	275	Right-handed alpha
Helix 23	AC5	G	5	10	Right-handed alpha
Helix 24	AC6	G	22	27	Right-handed alpha
Helix 25	AC7	G	29	39	Right-handed alpha
Helix 26	AC8	G	40	44	Right-handed 310
Helix 27	AC9	G	93	108	Right-handed alpha
Helix 28	AD1	G	124	132	Right-handed alpha
Helix 29	AD2	G	148	165	Right-handed alpha
Helix 30	AD3	G	166	169	Right-handed 310
Helix 31	AD4	G	171	187	Right-handed alpha
Helix 32	AD5	G	195	221	Right-handed alpha
Helix 33	AD6	H	4	16	Right-handed alpha
Helix 34	AD7	H	18	26	Right-handed alpha
Helix 35	AD8	H	29	39	Right-handed alpha
Helix 36	AD9	H	93	108	Right-handed alpha
Helix 37	AE1	H	123	134	Right-handed alpha
Helix 38	AE2	H	150	166	Right-handed alpha
Helix 39	AE3	H	167	169	Right-handed 310
Helix 40	AE4	H	171	186	Right-handed alpha
Helix 41	AE5	H	195	221	Right-handed alpha
Helix 42	AE6	H	261	263	Right-handed 310
Helix 43	AE7	I	213	221	Right-handed alpha
Helix 44	AE8	I	270	275	Right-handed alpha

There are 12 sheets in PDB entry 8FND. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	89	first strand
Strand 2	A	71	78	anti-parallel
Strand 3	A	60	68	anti-parallel
Strand 4	A	112	115	parallel
Strand 5	A	136	139	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	243	first strand
Strand 2	A	250	252	anti-parallel
Strand 3	A	257	259	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	89	first strand
Strand 2	B	71	78	anti-parallel
Strand 3	B	60	68	anti-parallel
Strand 4	B	112	114	parallel
Strand 5	B	136	138	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	260	first strand
Strand 2	B	249	252	anti-parallel
Strand 3	B	239	244	anti-parallel
Strand 4	B	223	227	anti-parallel
Strand 5	B	265	269	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	261	first strand
Strand 2	C	248	252	anti-parallel
Strand 3	C	236	244	anti-parallel
Strand 4	C	224	227	anti-parallel
Strand 5	C	265	267	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	261	first strand
Strand 2	D	248	252	anti-parallel
Strand 3	D	236	244	anti-parallel
Strand 4	D	224	227	anti-parallel
Strand 5	D	265	268	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	84	89	first strand
Strand 2	G	71	78	anti-parallel
Strand 3	G	60	68	anti-parallel
Strand 4	G	112	115	parallel
Strand 5	G	136	139	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	240	243	first strand
Strand 2	G	250	252	anti-parallel
Strand 3	G	257	259	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	84	89	first strand
Strand 2	H	71	78	anti-parallel
Strand 3	H	60	68	anti-parallel
Strand 4	H	112	114	parallel
Strand 5	H	136	138	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	257	260	first strand
Strand 2	H	249	252	anti-parallel
Strand 3	H	239	244	anti-parallel
Strand 4	H	223	227	anti-parallel
Strand 5	H	265	269	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	257	261	first strand
Strand 2	I	248	252	anti-parallel
Strand 3	I	236	244	anti-parallel
Strand 4	I	224	227	anti-parallel
Strand 5	I	265	267	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	257	261	first strand
Strand 2	J	248	252	anti-parallel
Strand 3	J	236	244	anti-parallel
Strand 4	J	224	227	anti-parallel
Strand 5	J	265	268	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FND

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FND