Analysis of interatomic Contacts of Structural Units in PDB entry:
8FNE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FNE entry

There are 8 chains in PDB entry 8FNE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 19	GLN 555
B	ALA 19	GLN 555
C	ALA 19	GLN 555
D	ALA 19	GLN 555
E	PRO 591	TYR 602
F	PRO 591	TYR 602
G	PRO 591	TYR 602
H	PRO 591	TYR 602

There are 80 helices in PDB entry 8FNE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	21	Right-handed 310
Helix 2	AA2	A	22	27	Right-handed alpha
Helix 3	AA3	A	36	56	Right-handed alpha
Helix 4	AA4	A	129	134	Right-handed alpha
Helix 5	AA5	A	135	151	Right-handed alpha
Helix 6	AA6	A	173	196	Right-handed alpha
Helix 7	AA7	A	202	207	Right-handed alpha
Helix 8	AA8	A	311	328	Right-handed alpha
Helix 9	AA9	A	330	336	Right-handed 310
Helix 10	AB1	A	347	354	Right-handed 310
Helix 11	AB2	A	369	381	Right-handed alpha
Helix 12	AB3	A	397	407	Right-handed alpha
Helix 13	AB4	A	412	429	Right-handed alpha
Helix 14	AB5	A	431	435	Right-handed 310
Helix 15	AB6	A	467	469	Right-handed 310
Helix 16	AB7	A	470	478	Right-handed alpha
Helix 17	AB8	A	481	492	Right-handed alpha
Helix 18	AB9	A	498	514	Right-handed alpha
Helix 19	AC1	A	530	543	Right-handed alpha
Helix 20	AC2	B	20	27	Right-handed alpha
Helix 21	AC3	B	36	56	Right-handed alpha
Helix 22	AC4	B	69	74	Right-handed alpha
Helix 23	AC5	B	129	134	Right-handed alpha
Helix 24	AC6	B	135	151	Right-handed alpha
Helix 25	AC7	B	173	196	Right-handed alpha
Helix 26	AC8	B	202	206	Right-handed 310
Helix 27	AC9	B	249	254	Right-handed 310
Helix 28	AD1	B	311	324	Right-handed alpha
Helix 29	AD2	B	325	327	Right-handed 310
Helix 30	AD3	B	329	336	Right-handed 310
Helix 31	AD4	B	347	354	Right-handed 310
Helix 32	AD5	B	369	381	Right-handed alpha
Helix 33	AD6	B	397	407	Right-handed alpha
Helix 34	AD7	B	412	429	Right-handed alpha
Helix 35	AD8	B	431	435	Right-handed 310
Helix 36	AD9	B	467	469	Right-handed 310
Helix 37	AE1	B	470	478	Right-handed alpha
Helix 38	AE2	B	481	492	Right-handed alpha
Helix 39	AE3	B	498	515	Right-handed alpha
Helix 40	AE4	B	530	543	Right-handed alpha
Helix 41	AE5	C	20	27	Right-handed alpha
Helix 42	AE6	C	36	56	Right-handed alpha
Helix 43	AE7	C	69	74	Right-handed alpha
Helix 44	AE8	C	129	134	Right-handed alpha
Helix 45	AE9	C	135	151	Right-handed alpha
Helix 46	AF1	C	173	196	Right-handed alpha
Helix 47	AF2	C	202	206	Right-handed 310
Helix 48	AF3	C	249	254	Right-handed 310
Helix 49	AF4	C	311	324	Right-handed alpha
Helix 50	AF5	C	325	327	Right-handed 310
Helix 51	AF6	C	329	336	Right-handed 310
Helix 52	AF7	C	347	354	Right-handed 310
Helix 53	AF8	C	369	381	Right-handed alpha
Helix 54	AF9	C	397	407	Right-handed alpha
Helix 55	AG1	C	412	429	Right-handed alpha
Helix 56	AG2	C	431	435	Right-handed 310
Helix 57	AG3	C	467	469	Right-handed 310
Helix 58	AG4	C	470	478	Right-handed alpha
Helix 59	AG5	C	481	492	Right-handed alpha
Helix 60	AG6	C	498	515	Right-handed alpha
Helix 61	AG7	C	530	543	Right-handed alpha
Helix 62	AG8	D	19	21	Right-handed 310
Helix 63	AG9	D	22	27	Right-handed alpha
Helix 64	AH1	D	36	56	Right-handed alpha
Helix 65	AH2	D	129	134	Right-handed alpha
Helix 66	AH3	D	135	151	Right-handed alpha
Helix 67	AH4	D	173	196	Right-handed alpha
Helix 68	AH5	D	202	207	Right-handed alpha
Helix 69	AH6	D	311	328	Right-handed alpha
Helix 70	AH7	D	330	336	Right-handed 310
Helix 71	AH8	D	347	354	Right-handed 310
Helix 72	AH9	D	369	381	Right-handed alpha
Helix 73	AI1	D	397	407	Right-handed alpha
Helix 74	AI2	D	412	429	Right-handed alpha
Helix 75	AI3	D	431	435	Right-handed 310
Helix 76	AI4	D	467	469	Right-handed 310
Helix 77	AI5	D	470	478	Right-handed alpha
Helix 78	AI6	D	481	492	Right-handed alpha
Helix 79	AI7	D	498	514	Right-handed alpha
Helix 80	AI8	D	530	543	Right-handed alpha

There are 24 sheets in PDB entry 8FNE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	68	first strand
Strand 2	A	79	88	anti-parallel
Strand 3	A	91	100	anti-parallel
Strand 4	A	156	159	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	68	first strand
Strand 2	A	79	88	anti-parallel
Strand 3	A	91	100	anti-parallel
Strand 4	A	163	164	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	117	first strand
Strand 2	A	120	126	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	446	first strand
Strand 2	A	518	529	anti-parallel
Strand 3	A	451	457	anti-parallel
Strand 4	A	463	465	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	446	first strand
Strand 2	A	518	529	anti-parallel
Strand 3	A	386	391	anti-parallel
Strand 4	A	292	303	parallel
Strand 5	A	259	271	anti-parallel
Strand 6	A	236	241	anti-parallel
Strand 7	A	213	219	anti-parallel
Strand 8	A	548	550	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	225	first strand
Strand 2	A	231	232	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	68	first strand
Strand 2	B	78	88	anti-parallel
Strand 3	B	91	101	anti-parallel
Strand 4	B	156	159	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	68	first strand
Strand 2	B	78	88	anti-parallel
Strand 3	B	91	101	anti-parallel
Strand 4	B	163	164	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	117	first strand
Strand 2	B	120	127	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	446	first strand
Strand 2	B	518	529	anti-parallel
Strand 3	B	451	457	anti-parallel
Strand 4	B	463	465	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	446	first strand
Strand 2	B	518	529	anti-parallel
Strand 3	B	386	391	anti-parallel
Strand 4	B	292	303	parallel
Strand 5	B	259	271	anti-parallel
Strand 6	B	236	244	anti-parallel
Strand 7	B	211	218	anti-parallel
Strand 8	B	548	549	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	225	first strand
Strand 2	B	231	232	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	68	first strand
Strand 2	C	78	88	anti-parallel
Strand 3	C	91	101	anti-parallel
Strand 4	C	156	159	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	68	first strand
Strand 2	C	78	88	anti-parallel
Strand 3	C	91	101	anti-parallel
Strand 4	C	163	164	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	117	first strand
Strand 2	C	120	127	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	444	446	first strand
Strand 2	C	518	529	anti-parallel
Strand 3	C	451	457	anti-parallel
Strand 4	C	463	465	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	444	446	first strand
Strand 2	C	518	529	anti-parallel
Strand 3	C	386	391	anti-parallel
Strand 4	C	292	303	parallel
Strand 5	C	259	271	anti-parallel
Strand 6	C	236	244	anti-parallel
Strand 7	C	211	218	anti-parallel
Strand 8	C	548	549	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	225	first strand
Strand 2	C	231	232	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	68	first strand
Strand 2	D	79	88	anti-parallel
Strand 3	D	91	100	anti-parallel
Strand 4	D	156	159	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	68	first strand
Strand 2	D	79	88	anti-parallel
Strand 3	D	91	100	anti-parallel
Strand 4	D	163	164	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	117	first strand
Strand 2	D	120	126	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	444	446	first strand
Strand 2	D	518	529	anti-parallel
Strand 3	D	451	457	anti-parallel
Strand 4	D	463	465	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	444	446	first strand
Strand 2	D	518	529	anti-parallel
Strand 3	D	386	391	anti-parallel
Strand 4	D	292	303	parallel
Strand 5	D	259	271	anti-parallel
Strand 6	D	236	241	anti-parallel
Strand 7	D	213	219	anti-parallel
Strand 8	D	548	550	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	225	first strand
Strand 2	D	231	232	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FNE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FNE