Analysis of interatomic Contacts of Structural Units in PDB entry:
8FNY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FNY entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 8FNY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 77LYS 347
A
 ILE 349GLU 725
B
 ASP 78LYS 148
C
 PHE 79LYS 347
C
 ILE 349GLU 724
D
 SER 81ALA 147
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 8FNY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
81 94Right-handed alpha
Helix 2
AA2
A
99 107Right-handed 310
Helix 3
AA3
A
160 164Right-handed 310
Helix 4
AA4
A
177 200Right-handed alpha
Helix 5
AA5
A
253 266Right-handed alpha
Helix 6
AA6
A
300 312Right-handed alpha
Helix 7
AA7
A
315 321Right-handed alpha
Helix 8
AA8
A
329 338Right-handed alpha
Helix 9
AA9
A
339 345Right-handed alpha
Helix 10
AB1
A
501 513Right-handed alpha
Helix 11
AB2
A
521 537Right-handed alpha
Helix 12
AB3
A
547 561Right-handed alpha
Helix 13
AB4
A
563 575Right-handed alpha
Helix 14
AB5
A
590 607Right-handed alpha
Helix 15
AB6
A
609 623Right-handed alpha
Helix 16
AB7
A
633 648Right-handed alpha
Helix 17
AB8
A
663 678Right-handed alpha
Helix 18
AB9
A
685 701Right-handed alpha
Helix 19
AC1
A
705 722Right-handed alpha
Helix 20
AC2
B
79 93Right-handed alpha
Helix 21
AC3
B
101 112Right-handed alpha
Helix 22
AC4
B
117 129Right-handed alpha
Helix 23
AC5
B
138 146Right-handed alpha
Helix 24
AC6
C
81 94Right-handed alpha
Helix 25
AC7
C
99 107Right-handed 310
Helix 26
AC8
C
160 164Right-handed 310
Helix 27
AC9
C
177 200Right-handed alpha
Helix 28
AD1
C
253 266Right-handed alpha
Helix 29
AD2
C
300 312Right-handed alpha
Helix 30
AD3
C
315 321Right-handed alpha
Helix 31
AD4
C
329 338Right-handed alpha
Helix 32
AD5
C
501 512Right-handed alpha
Helix 33
AD6
C
521 537Right-handed alpha
Helix 34
AD7
C
547 561Right-handed alpha
Helix 35
AD8
C
563 575Right-handed alpha
Helix 36
AD9
C
590 607Right-handed alpha
Helix 37
AE1
C
609 623Right-handed alpha
Helix 38
AE2
C
633 647Right-handed alpha
Helix 39
AE3
C
663 678Right-handed alpha
Helix 40
AE4
C
685 702Right-handed alpha
Helix 41
AE5
C
705 722Right-handed alpha
Helix 42
AE6
D
82 93Right-handed alpha
Helix 43
AE7
D
101 112Right-handed alpha
Helix 44
AE8
D
117 129Right-handed alpha
Helix 45
AE9
D
138 146Right-handed alpha
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There are 8 sheets in PDB entry 8FNY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
144 151anti-parallel
Strand 3
A
165 172anti-parallel
Strand 4
A
225 230anti-parallel
Strand 5
A
213 216anti-parallel
Strand 6
A
110 118anti-parallel
Strand 7
A
123 133anti-parallel
Strand 8
A
144 151anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 209first strand
Strand 2
A
281 282parallel
Strand 3
A
276 278anti-parallel
Strand 4
A
236 238anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 273first strand
Strand 2
A
286 289anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 100first strand
Strand 2
B
136 137anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
139 140first strand
Strand 2
C
144 151anti-parallel
Strand 3
C
165 172anti-parallel
Strand 4
C
225 230anti-parallel
Strand 5
C
213 216anti-parallel
Strand 6
C
110 118anti-parallel
Strand 7
C
123 133anti-parallel
Strand 8
C
144 151anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
208 209first strand
Strand 2
C
281 282parallel
Strand 3
C
276 278anti-parallel
Strand 4
C
236 238anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
270 273first strand
Strand 2
C
286 289anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
99 100first strand
Strand 2
D
136 137anti-parallel
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