Analysis of interatomic Contacts of Structural Units in PDB entry:
8FOD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FOD entry

There are 4 chains in PDB entry 8FOD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	THR 351	ASP 1451
A	SER 12	LEU 391
B	SER 42	GLN 515
C	ASN 253	SER 705

There are 95 helices in PDB entry 8FOD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	402	419	Right-handed alpha
Helix 2	AA2	1	480	489	Right-handed alpha
Helix 3	AA3	1	521	523	Right-handed 310
Helix 4	AA4	1	597	606	Right-handed alpha
Helix 5	AA5	1	615	631	Right-handed alpha
Helix 6	AA6	1	643	656	Right-handed alpha
Helix 7	AA7	1	659	664	Right-handed 310
Helix 8	AA8	1	682	691	Right-handed alpha
Helix 9	AA9	1	701	707	Right-handed alpha
Helix 10	AB1	1	715	725	Right-handed alpha
Helix 11	AB2	1	737	742	Right-handed 310
Helix 12	AB3	1	743	768	Right-handed alpha
Helix 13	AB4	1	769	782	Right-handed alpha
Helix 14	AB5	1	784	790	Right-handed alpha
Helix 15	AB6	1	792	807	Right-handed alpha
Helix 16	AB7	1	868	876	Right-handed alpha
Helix 17	AB8	1	905	927	Right-handed alpha
Helix 18	AB9	1	929	950	Right-handed alpha
Helix 19	AC1	1	951	954	Right-handed 310
Helix 20	AC2	1	963	988	Right-handed alpha
Helix 21	AC3	1	1008	1027	Right-handed alpha
Helix 22	AC4	1	1079	1094	Right-handed alpha
Helix 23	AC5	1	1100	1120	Right-handed alpha
Helix 24	AC6	1	1123	1128	Right-handed 310
Helix 25	AC7	1	1136	1140	Right-handed 310
Helix 26	AC8	1	1146	1156	Right-handed alpha
Helix 27	AC9	1	1196	1201	Right-handed alpha
Helix 28	AD1	1	1202	1205	Right-handed 310
Helix 29	AD2	1	1209	1216	Right-handed alpha
Helix 30	AD3	1	1218	1226	Right-handed alpha
Helix 31	AD4	1	1275	1280	Right-handed 310
Helix 32	AD5	1	1322	1344	Right-handed alpha
Helix 33	AD6	1	1381	1395	Right-handed alpha
Helix 34	AD7	1	1397	1403	Right-handed alpha
Helix 35	AD8	1	1423	1434	Right-handed alpha
Helix 36	AD9	1	1434	1450	Right-handed alpha
Helix 37	AE1	A	13	22	Right-handed alpha
Helix 38	AE2	A	24	34	Right-handed alpha
Helix 39	AE3	A	39	44	Right-handed alpha
Helix 40	AE4	A	64	76	Right-handed alpha
Helix 41	AE5	A	89	96	Right-handed 310
Helix 42	AE6	A	113	121	Right-handed 310
Helix 43	AE7	A	133	151	Right-handed alpha
Helix 44	AE8	A	173	178	Right-handed alpha
Helix 45	AE9	A	180	192	Right-handed alpha
Helix 46	AF1	A	210	229	Right-handed alpha
Helix 47	AF2	A	233	236	Right-handed 310
Helix 48	AF3	A	237	245	Right-handed alpha
Helix 49	AF4	A	251	265	Right-handed alpha
Helix 50	AF5	A	269	285	Right-handed alpha
Helix 51	AF6	A	289	310	Right-handed alpha
Helix 52	AF7	A	315	320	Right-handed alpha
Helix 53	AF8	A	347	351	Right-handed 310
Helix 54	AF9	A	353	364	Right-handed alpha
Helix 55	AG1	A	366	370	Right-handed 310
Helix 56	AG2	A	371	391	Right-handed alpha
Helix 57	AG3	B	43	55	Right-handed alpha
Helix 58	AG4	B	71	95	Right-handed alpha
Helix 59	AG5	B	98	113	Right-handed alpha
Helix 60	AG6	B	120	138	Right-handed alpha
Helix 61	AG7	B	141	163	Right-handed alpha
Helix 62	AG8	B	164	174	Right-handed alpha
Helix 63	AG9	B	184	191	Right-handed alpha
Helix 64	AH1	B	191	208	Right-handed alpha
Helix 65	AH2	B	211	222	Right-handed alpha
Helix 66	AH3	B	232	238	Right-handed alpha
Helix 67	AH4	B	255	278	Right-handed alpha
Helix 68	AH5	B	279	281	Right-handed 310
Helix 69	AH6	B	287	297	Right-handed alpha
Helix 70	AH7	B	322	325	Right-handed 310
Helix 71	AH8	B	326	331	Right-handed alpha
Helix 72	AH9	B	334	348	Right-handed alpha
Helix 73	AI1	B	351	366	Right-handed alpha
Helix 74	AI2	B	368	380	Right-handed alpha
Helix 75	AI3	B	387	395	Right-handed alpha
Helix 76	AI4	B	395	402	Right-handed alpha
Helix 77	AI5	B	416	423	Right-handed alpha
Helix 78	AI6	B	434	439	Right-handed alpha
Helix 79	AI7	B	440	451	Right-handed alpha
Helix 80	AI8	B	454	468	Right-handed alpha
Helix 81	AI9	B	469	483	Right-handed alpha
Helix 82	AJ1	B	499	515	Right-handed alpha
Helix 83	AJ2	C	254	277	Right-handed alpha
Helix 84	AJ3	C	321	326	Right-handed alpha
Helix 85	AJ4	C	378	389	Right-handed alpha
Helix 86	AJ5	C	410	423	Right-handed alpha
Helix 87	AJ6	C	440	445	Right-handed alpha
Helix 88	AJ7	C	460	469	Right-handed alpha
Helix 89	AJ8	C	469	474	Right-handed alpha
Helix 90	AJ9	C	537	542	Right-handed alpha
Helix 91	AK1	C	548	554	Right-handed alpha
Helix 92	AK2	C	555	567	Right-handed alpha
Helix 93	AK3	C	613	617	Right-handed 310
Helix 94	AK4	C	622	626	Right-handed 310
Helix 95	AK5	C	693	697	Right-handed alpha

There are 19 sheets in PDB entry 8FOD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	515	519	first strand
Strand 2	1	380	386	parallel
Strand 3	1	365	372	anti-parallel
Strand 4	1	352	362	anti-parallel
Strand 5	1	496	499	anti-parallel
Strand 6	1	525	527	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	425	431	first strand
Strand 2	1	442	451	anti-parallel
Strand 3	1	390	397	anti-parallel
Strand 4	1	471	475	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	609	612	first strand
Strand 2	1	581	586	parallel
Strand 3	1	553	567	anti-parallel
Strand 4	1	536	548	anti-parallel
Strand 5	1	634	637	parallel
Strand 6	1	695	698	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	854	856	first strand
Strand 2	1	1034	1045	anti-parallel
Strand 3	1	860	864	anti-parallel
Strand 4	1	999	1003	anti-parallel
Strand 5	1	991	995	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	854	856	first strand
Strand 2	1	1034	1045	anti-parallel
Strand 3	1	1048	1054	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	1129	1132	first strand
Strand 2	1	1167	1172	anti-parallel
Strand 3	1	1193	1195	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	1283	1286	first strand
Strand 2	1	1293	1296	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	1305	1307	first strand
Strand 2	1	1312	1314	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	1356	1357	first strand
Strand 2	1	1346	1348	anti-parallel
Strand 3	1	1376	1378	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	60	first strand
Strand 2	A	45	50	anti-parallel
Strand 3	A	79	86	anti-parallel
Strand 4	A	103	105	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	60	first strand
Strand 2	A	45	50	anti-parallel
Strand 3	A	79	86	anti-parallel
Strand 4	A	325	326	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	112	first strand
Strand 2	A	167	171	anti-parallel
Strand 3	A	157	161	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	182	first strand
Strand 2	B	225	228	anti-parallel
Strand 3	B	247	250	anti-parallel
Strand 4	B	242	244	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	302	first strand
Strand 2	C	316	319	anti-parallel
Strand 3	C	329	333	anti-parallel
Strand 4	C	360	365	parallel
Strand 5	C	348	353	anti-parallel
Strand 6	C	294	302	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	342	first strand
Strand 2	C	545	547	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	377	first strand
Strand 2	C	689	691	anti-parallel
Strand 3	C	681	683	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	515	517	first strand
Strand 2	C	481	485	parallel
Strand 3	C	428	432	parallel
Strand 4	C	393	399	parallel
Strand 5	C	665	670	anti-parallel
Strand 6	C	698	703	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	522	526	first strand
Strand 2	C	529	533	anti-parallel
Strand 3	C	630	632	parallel
Strand 4	C	648	651	parallel
Strand 5	C	640	643	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	578	579	first strand
Strand 2	C	608	609	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FOD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FOD