Analysis of interatomic Contacts of Structural Units in PDB entry:
8FOJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FOJ entry

There are 6 chains in PDB entry 8FOJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	THR 351	CYS 1452
A	TYR 19	SER 393
B	SER 42	LYS 512
C	ARG 248	SER 705
T	G 5	T 15
P	A 1	G 10

There are 90 helices in PDB entry 8FOJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	402	419	Right-handed alpha
Helix 2	AA2	1	480	489	Right-handed alpha
Helix 3	AA3	1	521	523	Right-handed 310
Helix 4	AA4	1	615	631	Right-handed alpha
Helix 5	AA5	1	643	655	Right-handed alpha
Helix 6	AA6	1	659	664	Right-handed 310
Helix 7	AA7	1	682	691	Right-handed alpha
Helix 8	AA8	1	701	707	Right-handed alpha
Helix 9	AA9	1	715	725	Right-handed alpha
Helix 10	AB1	1	737	742	Right-handed 310
Helix 11	AB2	1	743	769	Right-handed alpha
Helix 12	AB3	1	769	782	Right-handed alpha
Helix 13	AB4	1	784	791	Right-handed alpha
Helix 14	AB5	1	798	807	Right-handed alpha
Helix 15	AB6	1	867	877	Right-handed alpha
Helix 16	AB7	1	904	927	Right-handed alpha
Helix 17	AB8	1	929	949	Right-handed alpha
Helix 18	AB9	1	950	954	Right-handed 310
Helix 19	AC1	1	963	988	Right-handed alpha
Helix 20	AC2	1	1008	1027	Right-handed alpha
Helix 21	AC3	1	1071	1075	Right-handed 310
Helix 22	AC4	1	1079	1093	Right-handed alpha
Helix 23	AC5	1	1101	1120	Right-handed alpha
Helix 24	AC6	1	1123	1128	Right-handed 310
Helix 25	AC7	1	1146	1159	Right-handed alpha
Helix 26	AC8	1	1196	1201	Right-handed alpha
Helix 27	AC9	1	1202	1205	Right-handed 310
Helix 28	AD1	1	1209	1217	Right-handed alpha
Helix 29	AD2	1	1218	1226	Right-handed alpha
Helix 30	AD3	1	1233	1240	Right-handed alpha
Helix 31	AD4	1	1322	1343	Right-handed alpha
Helix 32	AD5	1	1381	1396	Right-handed alpha
Helix 33	AD6	1	1397	1404	Right-handed alpha
Helix 34	AD7	1	1423	1434	Right-handed alpha
Helix 35	AD8	1	1434	1450	Right-handed alpha
Helix 36	AD9	A	24	34	Right-handed alpha
Helix 37	AE1	A	39	44	Right-handed alpha
Helix 38	AE2	A	64	76	Right-handed alpha
Helix 39	AE3	A	113	121	Right-handed 310
Helix 40	AE4	A	130	151	Right-handed alpha
Helix 41	AE5	A	173	178	Right-handed alpha
Helix 42	AE6	A	180	192	Right-handed alpha
Helix 43	AE7	A	210	229	Right-handed alpha
Helix 44	AE8	A	237	245	Right-handed alpha
Helix 45	AE9	A	251	261	Right-handed alpha
Helix 46	AF1	A	271	285	Right-handed alpha
Helix 47	AF2	A	289	310	Right-handed alpha
Helix 48	AF3	A	315	320	Right-handed alpha
Helix 49	AF4	A	347	351	Right-handed 310
Helix 50	AF5	A	372	393	Right-handed alpha
Helix 51	AF6	B	43	55	Right-handed alpha
Helix 52	AF7	B	71	95	Right-handed alpha
Helix 53	AF8	B	98	113	Right-handed alpha
Helix 54	AF9	B	120	139	Right-handed alpha
Helix 55	AG1	B	141	163	Right-handed alpha
Helix 56	AG2	B	164	174	Right-handed alpha
Helix 57	AG3	B	184	191	Right-handed alpha
Helix 58	AG4	B	191	207	Right-handed alpha
Helix 59	AG5	B	211	222	Right-handed alpha
Helix 60	AG6	B	228	231	Right-handed 310
Helix 61	AG7	B	232	238	Right-handed alpha
Helix 62	AG8	B	255	282	Right-handed alpha
Helix 63	AG9	B	287	297	Right-handed alpha
Helix 64	AH1	B	322	325	Right-handed 310
Helix 65	AH2	B	326	331	Right-handed alpha
Helix 66	AH3	B	334	348	Right-handed alpha
Helix 67	AH4	B	351	366	Right-handed alpha
Helix 68	AH5	B	368	380	Right-handed alpha
Helix 69	AH6	B	388	395	Right-handed alpha
Helix 70	AH7	B	395	403	Right-handed alpha
Helix 71	AH8	B	416	423	Right-handed alpha
Helix 72	AH9	B	434	439	Right-handed alpha
Helix 73	AI1	B	440	451	Right-handed alpha
Helix 74	AI2	B	454	467	Right-handed alpha
Helix 75	AI3	B	469	482	Right-handed alpha
Helix 76	AI4	B	499	511	Right-handed alpha
Helix 77	AI5	C	253	276	Right-handed alpha
Helix 78	AI6	C	279	283	Right-handed 310
Helix 79	AI7	C	321	326	Right-handed alpha
Helix 80	AI8	C	377	389	Right-handed alpha
Helix 81	AI9	C	410	423	Right-handed alpha
Helix 82	AJ1	C	440	445	Right-handed alpha
Helix 83	AJ2	C	460	474	Right-handed alpha
Helix 84	AJ3	C	504	509	Right-handed alpha
Helix 85	AJ4	C	537	542	Right-handed alpha
Helix 86	AJ5	C	548	554	Right-handed alpha
Helix 87	AJ6	C	555	568	Right-handed alpha
Helix 88	AJ7	C	613	621	Right-handed 310
Helix 89	AJ8	C	622	626	Right-handed 310
Helix 90	AJ9	C	693	697	Right-handed alpha

There are 19 sheets in PDB entry 8FOJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	515	519	first strand
Strand 2	1	381	386	parallel
Strand 3	1	365	371	anti-parallel
Strand 4	1	352	362	anti-parallel
Strand 5	1	496	499	anti-parallel
Strand 6	1	525	527	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	424	431	first strand
Strand 2	1	442	451	anti-parallel
Strand 3	1	390	397	anti-parallel
Strand 4	1	471	475	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	610	612	first strand
Strand 2	1	582	586	parallel
Strand 3	1	553	564	anti-parallel
Strand 4	1	538	548	anti-parallel
Strand 5	1	634	637	parallel
Strand 6	1	695	698	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	854	856	first strand
Strand 2	1	1033	1043	anti-parallel
Strand 3	1	860	864	anti-parallel
Strand 4	1	999	1003	anti-parallel
Strand 5	1	991	995	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	854	856	first strand
Strand 2	1	1033	1043	anti-parallel
Strand 3	1	1049	1054	anti-parallel
Strand 4	1	1065	1069	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	1129	1132	first strand
Strand 2	1	1167	1172	anti-parallel
Strand 3	1	1193	1195	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	1284	1286	first strand
Strand 2	1	1293	1295	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	1305	1307	first strand
Strand 2	1	1312	1314	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	1356	1357	first strand
Strand 2	1	1346	1348	anti-parallel
Strand 3	1	1376	1377	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	48	first strand
Strand 2	A	81	86	anti-parallel
Strand 3	A	103	105	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	48	first strand
Strand 2	A	81	86	anti-parallel
Strand 3	A	325	326	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	112	first strand
Strand 2	A	167	171	anti-parallel
Strand 3	A	157	161	anti-parallel
Strand 4	A	341	342	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	182	first strand
Strand 2	B	225	227	anti-parallel
Strand 3	B	247	250	anti-parallel
Strand 4	B	242	244	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	302	first strand
Strand 2	C	316	319	anti-parallel
Strand 3	C	330	333	anti-parallel
Strand 4	C	359	366	parallel
Strand 5	C	347	353	anti-parallel
Strand 6	C	294	302	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	342	first strand
Strand 2	C	545	547	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	376	first strand
Strand 2	C	689	691	anti-parallel
Strand 3	C	682	683	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	515	517	first strand
Strand 2	C	481	485	parallel
Strand 3	C	428	432	parallel
Strand 4	C	393	398	parallel
Strand 5	C	665	670	anti-parallel
Strand 6	C	698	703	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	522	526	first strand
Strand 2	C	529	533	anti-parallel
Strand 3	C	630	632	parallel
Strand 4	C	647	651	parallel
Strand 5	C	640	644	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	578	579	first strand
Strand 2	C	608	609	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FOJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FOJ