Analysis of interatomic Contacts of Structural Units in PDB entry:
8FOV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FOV entry

There are 2 chains in PDB entry 8FOV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 0	ARG 513
B	PRO 0	HIS 512

There are 45 helices in PDB entry 8FOV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	26	Right-handed alpha
Helix 2	AA2	A	27	29	Right-handed 310
Helix 3	AA3	A	51	60	Right-handed alpha
Helix 4	AA4	A	62	70	Right-handed alpha
Helix 5	AA5	A	105	112	Right-handed alpha
Helix 6	AA6	A	117	123	Right-handed alpha
Helix 7	AA7	A	124	131	Right-handed alpha
Helix 8	AA8	A	142	147	Right-handed 310
Helix 9	AA9	A	171	186	Right-handed alpha
Helix 10	AB1	A	302	315	Right-handed alpha
Helix 11	AB2	A	316	319	Right-handed 310
Helix 12	AB3	A	352	356	Right-handed 310
Helix 13	AB4	A	357	372	Right-handed alpha
Helix 14	AB5	A	379	408	Right-handed alpha
Helix 15	AB6	A	413	419	Right-handed alpha
Helix 16	AB7	A	427	436	Right-handed alpha
Helix 17	AB8	A	441	445	Right-handed 310
Helix 18	AB9	A	453	465	Right-handed alpha
Helix 19	AC1	A	472	478	Right-handed 310
Helix 20	AC2	A	480	501	Right-handed alpha
Helix 21	AC3	A	503	512	Right-handed alpha
Helix 22	AC4	B	11	26	Right-handed alpha
Helix 23	AC5	B	27	29	Right-handed 310
Helix 24	AC6	B	51	59	Right-handed alpha
Helix 25	AC7	B	62	67	Right-handed alpha
Helix 26	AC8	B	68	71	Right-handed 310
Helix 27	AC9	B	105	112	Right-handed alpha
Helix 28	AD1	B	117	123	Right-handed alpha
Helix 29	AD2	B	124	131	Right-handed alpha
Helix 30	AD3	B	142	147	Right-handed 310
Helix 31	AD4	B	171	186	Right-handed alpha
Helix 32	AD5	B	226	230	Right-handed 310
Helix 33	AD6	B	261	266	Right-handed alpha
Helix 34	AD7	B	302	315	Right-handed alpha
Helix 35	AD8	B	316	321	Right-handed 310
Helix 36	AD9	B	352	356	Right-handed 310
Helix 37	AE1	B	357	372	Right-handed alpha
Helix 38	AE2	B	379	408	Right-handed alpha
Helix 39	AE3	B	413	419	Right-handed alpha
Helix 40	AE4	B	427	436	Right-handed alpha
Helix 41	AE5	B	441	445	Right-handed 310
Helix 42	AE6	B	453	465	Right-handed alpha
Helix 43	AE7	B	472	478	Right-handed 310
Helix 44	AE8	B	480	501	Right-handed alpha
Helix 45	AE9	B	503	512	Right-handed alpha

There are 12 sheets in PDB entry 8FOV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	192	first strand
Strand 2	A	30	35	parallel
Strand 3	A	4	8	parallel
Strand 4	A	221	224	parallel
Strand 5	A	341	343	parallel
Strand 6	A	337	338	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	75	first strand
Strand 2	A	167	169	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	93	first strand
Strand 2	A	77	81	anti-parallel
Strand 3	A	271	276	parallel
Strand 4	A	279	285	anti-parallel
Strand 5	A	289	296	anti-parallel
Strand 6	A	252	259	anti-parallel
Strand 7	A	324	327	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	103	104	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	200	first strand
Strand 2	A	206	211	anti-parallel
Strand 3	A	216	218	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	243	first strand
Strand 2	A	331	333	anti-parallel
Strand 3	A	349	350	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	192	first strand
Strand 2	B	30	35	parallel
Strand 3	B	4	8	parallel
Strand 4	B	221	224	parallel
Strand 5	B	341	343	parallel
Strand 6	B	337	338	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	75	first strand
Strand 2	B	167	169	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	93	first strand
Strand 2	B	77	81	anti-parallel
Strand 3	B	271	276	parallel
Strand 4	B	279	285	anti-parallel
Strand 5	B	289	296	anti-parallel
Strand 6	B	252	259	anti-parallel
Strand 7	B	324	327	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	103	104	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	200	first strand
Strand 2	B	206	211	anti-parallel
Strand 3	B	216	217	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	243	first strand
Strand 2	B	331	333	anti-parallel
Strand 3	B	349	350	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FOV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FOV