Analysis of interatomic Contacts of Structural Units in PDB entry:
8FOY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FOY entry

There is 1 chain in PDB entry 8FOY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ALA 2	CYS 501

There are 15 helices in PDB entry 8FOY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	53	59	Right-handed alpha
Helix 2	AA2	D	62	75	Right-handed alpha
Helix 3	AA3	D	117	121	Right-handed 310
Helix 4	AA4	D	131	143	Right-handed alpha
Helix 5	AA5	D	166	170	Right-handed 310
Helix 6	AA6	D	208	213	Right-handed alpha
Helix 7	AA7	D	227	242	Right-handed alpha
Helix 8	AA8	D	260	267	Right-handed alpha
Helix 9	AA9	D	286	303	Right-handed alpha
Helix 10	AB1	D	311	316	Right-handed alpha
Helix 11	AB2	D	332	342	Right-handed alpha
Helix 12	AB3	D	384	403	Right-handed alpha
Helix 13	AB4	D	404	406	Right-handed 310
Helix 14	AB5	D	425	440	Right-handed alpha
Helix 15	AB6	D	450	454	Right-handed alpha

There are 6 sheets in PDB entry 8FOY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	48	first strand
Strand 2	D	81	86	anti-parallel
Strand 3	D	28	33	parallel
Strand 4	D	220	223	parallel
Strand 5	D	252	258	parallel
Strand 6	D	274	279	parallel
Strand 7	D	345	349	parallel
Strand 8	D	361	363	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	154	first strand
Strand 2	D	157	162	anti-parallel
Strand 3	D	96	102	anti-parallel
Strand 4	D	191	194	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	113	first strand
Strand 2	D	122	126	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	323	324	first strand
Strand 2	D	358	359	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	409	410	first strand
Strand 2	D	423	424	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	455	459	first strand
Strand 2	D	474	478	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FOY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FOY