Analysis of interatomic Contacts of Structural Units in PDB entry:
8FP3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FP3 entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 8FP3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 349ALA 512
A
 PHE 514LEU 655
A
 PRO 657PRO 679
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8FP3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
351 353Right-handed 310
Helix 2
AA2
A
388 394Right-handed alpha
Helix 3
AA3
A
396 410Right-handed alpha
Helix 4
AA4
A
440 449Right-handed alpha
Helix 5
AA5
A
452 473Right-handed alpha
Helix 6
AA6
A
481 483Right-handed 310
Helix 7
AA7
A
517 521Right-handed 310
Helix 8
AA8
A
522 527Right-handed alpha
Helix 9
AA9
A
533 550Right-handed alpha
Helix 10
AB1
A
558 569Right-handed alpha
Helix 11
AB2
A
578 589Right-handed alpha
Helix 12
AB3
A
592 596Right-handed 310
Helix 13
AB4
A
599 604Right-handed 310
Helix 14
AB5
A
605 610Right-handed alpha
Helix 15
AB6
A
611 615Right-handed 310
Helix 16
AB7
A
618 624Right-handed alpha
Helix 17
AB8
A
645 650Right-handed alpha
Helix 18
AB9
A
662 666Right-handed 310
Helix 19
AC1
A
667 672Right-handed 310
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There are 2 sheets in PDB entry 8FP3. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 364first strand
Strand 2
A
367 374anti-parallel
Strand 3
A
380 387anti-parallel
Strand 4
A
428 433anti-parallel
Strand 5
A
419 424anti-parallel
Strand 6
A
676 677anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
485 487first strand
Strand 2
A
493 495anti-parallel
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