Analysis of interatomic Contacts of Structural Units in PDB entry:
8FPF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FPF entry

There are 2 chains in PDB entry 8FPF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	LYS 2	GLY 667
C	PHE 2	TYR 570

There are 50 helices in PDB entry 8FPF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	2	13	Right-handed alpha
Helix 2	AA2	D	14	48	Right-handed alpha
Helix 3	AA3	D	49	52	Right-handed 310
Helix 4	AA4	D	136	143	Right-handed alpha
Helix 5	AA5	D	145	194	Right-handed alpha
Helix 6	AA6	D	197	203	Right-handed alpha
Helix 7	AA7	D	205	249	Right-handed alpha
Helix 8	AA8	D	249	258	Right-handed alpha
Helix 9	AA9	D	259	297	Right-handed alpha
Helix 10	AB1	D	299	305	Right-handed alpha
Helix 11	AB2	D	307	334	Right-handed alpha
Helix 12	AB3	D	338	363	Right-handed alpha
Helix 13	AB4	D	368	383	Right-handed alpha
Helix 14	AB5	D	385	411	Right-handed alpha
Helix 15	AB6	D	469	477	Right-handed alpha
Helix 16	AB7	D	495	497	Right-handed 310
Helix 17	AB8	D	498	505	Right-handed alpha
Helix 18	AB9	D	519	526	Right-handed alpha
Helix 19	AC1	D	534	536	Right-handed 310
Helix 20	AC2	D	537	542	Right-handed alpha
Helix 21	AC3	D	545	550	Right-handed alpha
Helix 22	AC4	D	559	563	Right-handed 310
Helix 23	AC5	D	568	584	Right-handed alpha
Helix 24	AC6	D	601	614	Right-handed alpha
Helix 25	AC7	D	647	652	Right-handed alpha
Helix 26	AC8	D	655	666	Right-handed alpha
Helix 27	AC9	C	3	8	Right-handed alpha
Helix 28	AD1	C	8	15	Right-handed alpha
Helix 29	AD2	C	16	34	Right-handed alpha
Helix 30	AD3	C	35	49	Right-handed alpha
Helix 31	AD4	C	53	103	Right-handed alpha
Helix 32	AD5	C	105	112	Right-handed alpha
Helix 33	AD6	C	113	123	Right-handed alpha
Helix 34	AD7	C	123	157	Right-handed alpha
Helix 35	AD8	C	159	166	Right-handed alpha
Helix 36	AD9	C	167	207	Right-handed alpha
Helix 37	AE1	C	207	214	Right-handed alpha
Helix 38	AE2	C	216	243	Right-handed alpha
Helix 39	AE3	C	244	271	Right-handed alpha
Helix 40	AE4	C	274	289	Right-handed alpha
Helix 41	AE5	C	289	318	Right-handed alpha
Helix 42	AE6	C	378	383	Right-handed alpha
Helix 43	AE7	C	406	413	Right-handed alpha
Helix 44	AE8	C	427	437	Right-handed alpha
Helix 45	AE9	C	441	451	Right-handed alpha
Helix 46	AF1	C	453	459	Right-handed alpha
Helix 47	AF2	C	478	491	Right-handed alpha
Helix 48	AF3	C	509	521	Right-handed alpha
Helix 49	AF4	C	533	537	Right-handed 310
Helix 50	AF5	C	555	561	Right-handed alpha

There are 10 sheets in PDB entry 8FPF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	57	first strand
Strand 2	D	71	74	anti-parallel
Strand 3	D	65	66	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	93	first strand
Strand 2	D	96	100	anti-parallel
Strand 3	D	131	132	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	112	first strand
Strand 2	D	116	119	anti-parallel
Strand 3	D	126	129	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	452	453	first strand
Strand 2	D	430	433	anti-parallel
Strand 3	D	486	489	anti-parallel
Strand 4	D	492	493	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	435	438	first strand
Strand 2	D	444	449	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	506	509	first strand
Strand 2	D	587	591	parallel
Strand 3	D	617	621	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	634	638	first strand
Strand 2	D	641	646	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	342	first strand
Strand 2	C	357	361	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	414	417	first strand
Strand 2	C	495	499	parallel
Strand 3	C	525	529	parallel
Strand 4	C	366	371	parallel
Strand 5	C	541	546	parallel
Strand 6	C	549	554	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	396	397	first strand
Strand 2	C	400	401	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FPF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FPF