Analysis of interatomic Contacts of Structural Units in PDB entry:
8FPI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FPI entry

There are 5 chains in PDB entry 8FPI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 11PHE 1460
B
 ASN 130GLU 228
C
 ASN 130LEU 186
D
 ASN 130GLU 184
E
 ILE 131ARG 199
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 86 helices in PDB entry 8FPI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 37Right-handed alpha
Helix 2
AA2
A
44 47Right-handed 310
Helix 3
AA3
A
48 53Right-handed alpha
Helix 4
AA4
A
55 64Right-handed alpha
Helix 5
AA5
A
64 76Right-handed alpha
Helix 6
AA6
A
83 93Right-handed alpha
Helix 7
AA7
A
105 132Right-handed alpha
Helix 8
AA8
A
187 197Right-handed alpha
Helix 9
AA9
A
201 228Right-handed alpha
Helix 10
AB1
A
265 296Right-handed alpha
Helix 11
AB2
A
306 324Right-handed alpha
Helix 12
AB3
A
327 334Right-handed alpha
Helix 13
AB4
A
334 348Right-handed alpha
Helix 14
AB5
A
349 379Right-handed alpha
Helix 15
AB6
A
380 382Right-handed 310
Helix 16
AB7
A
384 388Right-handed 310
Helix 17
AB8
A
389 394Right-handed alpha
Helix 18
AB9
A
396 413Right-handed alpha
Helix 19
AC1
A
415 422Right-handed alpha
Helix 20
AC2
A
423 428Right-handed 310
Helix 21
AC3
A
435 449Right-handed alpha
Helix 22
AC4
A
455 477Right-handed alpha
Helix 23
AC5
A
485 489Right-handed 310
Helix 24
AC6
A
490 499Right-handed alpha
Helix 25
AC7
A
509 517Right-handed alpha
Helix 26
AC8
A
532 537Right-handed alpha
Helix 27
AC9
A
545 553Right-handed 310
Helix 28
AD1
A
559 570Right-handed alpha
Helix 29
AD2
A
571 573Right-handed 310
Helix 30
AD3
A
581 588Right-handed alpha
Helix 31
AD4
A
595 604Right-handed alpha
Helix 32
AD5
A
633 651Right-handed alpha
Helix 33
AD6
A
652 655Right-handed 310
Helix 34
AD7
A
703 708Right-handed alpha
Helix 35
AD8
A
709 714Right-handed alpha
Helix 36
AD9
A
716 724Right-handed alpha
Helix 37
AE1
A
731 737Right-handed alpha
Helix 38
AE2
A
738 740Right-handed 310
Helix 39
AE3
A
781 801Right-handed alpha
Helix 40
AE4
A
828 851Right-handed alpha
Helix 41
AE5
A
882 887Right-handed alpha
Helix 42
AE6
A
900 913Right-handed alpha
Helix 43
AE7
A
913 918Right-handed alpha
Helix 44
AE8
A
921 939Right-handed alpha
Helix 45
AE9
A
940 944Right-handed 310
Helix 46
AF1
A
949 966Right-handed alpha
Helix 47
AF2
A
972 979Right-handed alpha
Helix 48
AF3
A
982 986Right-handed 310
Helix 49
AF4
A
992 997Right-handed 310
Helix 50
AF5
A
1003 1021Right-handed alpha
Helix 51
AF6
A
1034 1045Right-handed alpha
Helix 52
AF7
A
1052 1060Right-handed alpha
Helix 53
AF8
A
1072 1086Right-handed alpha
Helix 54
AF9
A
1090 1099Right-handed alpha
Helix 55
AG1
A
1099 1107Right-handed alpha
Helix 56
AG2
A
1118 1128Right-handed alpha
Helix 57
AG3
A
1130 1142Right-handed alpha
Helix 58
AG4
A
1158 1180Right-handed alpha
Helix 59
AG5
A
1183 1188Right-handed alpha
Helix 60
AG6
A
1198 1212Right-handed alpha
Helix 61
AG7
A
1223 1227Right-handed alpha
Helix 62
AG8
A
1277 1281Right-handed 310
Helix 63
AG9
A
1282 1299Right-handed alpha
Helix 64
AH1
A
1304 1317Right-handed alpha
Helix 65
AH2
A
1335 1340Right-handed alpha
Helix 66
AH3
A
1354 1359Right-handed alpha
Helix 67
AH4
A
1365 1377Right-handed alpha
Helix 68
AH5
A
1384 1404Right-handed alpha
Helix 69
AH6
A
1416 1419Right-handed 310
Helix 70
AH7
A
1432 1443Right-handed alpha
Helix 71
AH8
A
1444 1447Right-handed 310
Helix 72
AH9
A
1452 1457Right-handed alpha
Helix 73
AI1
B
133 139Right-handed alpha
Helix 74
AI2
B
174 183Right-handed alpha
Helix 75
AI3
B
190 199Right-handed alpha
Helix 76
AI4
B
203 210Right-handed alpha
Helix 77
AI5
B
217 227Right-handed alpha
Helix 78
AI6
C
133 157Right-handed alpha
Helix 79
AI7
C
158 165Right-handed alpha
Helix 80
AI8
C
166 172Right-handed alpha
Helix 81
AI9
C
174 186Right-handed alpha
Helix 82
AJ1
D
136 157Right-handed alpha
Helix 83
AJ2
D
163 182Right-handed alpha
Helix 84
AJ3
E
132 153Right-handed alpha
Helix 85
AJ4
E
176 178Right-handed 310
Helix 86
AJ5
E
179 199Right-handed alpha
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There are 9 sheets in PDB entry 8FPI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
260 264parallel
Strand 3
A
250 255anti-parallel
Strand 4
A
242 247anti-parallel
Strand 5
A
233 235anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 454first strand
Strand 2
B
152 155anti-parallel
Strand 3
B
170 173anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
614 616first strand
Strand 2
A
742 744parallel
Strand 3
A
769 770anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
813 820first strand
Strand 2
A
692 699anti-parallel
Strand 3
A
861 863anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
873 875first strand
Strand 2
A
878 880anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1228 1231first strand
Strand 2
A
1409 1414anti-parallel
Strand 3
A
1241 1245anti-parallel
Strand 4
A
1361 1364anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1271 1272first strand
Strand 2
A
1330 1331anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1381 1382first strand
Strand 2
A
1420 1421anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 159first strand
Strand 2
B
166 167anti-parallel
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