Analysis of interatomic Contacts of Structural Units in PDB entry:
8FPJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FPJ entry

There are 5 chains in PDB entry 8FPJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 8ASP 1377
B
 ILE 172SER 266
C
 SER 171MET 233
D
 ILE 172LEU 218
E
 GLU 173ALA 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 82 helices in PDB entry 8FPJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 36Right-handed alpha
Helix 2
AA2
A
43 52Right-handed alpha
Helix 3
AA3
A
54 67Right-handed alpha
Helix 4
AA4
A
69 73Right-handed 310
Helix 5
AA5
A
77 80Right-handed 310
Helix 6
AA6
A
81 88Right-handed alpha
Helix 7
AA7
A
93 120Right-handed alpha
Helix 8
AA8
A
129 134Right-handed 310
Helix 9
AA9
A
135 139Right-handed 310
Helix 10
AB1
A
143 167Right-handed alpha
Helix 11
AB2
A
208 231Right-handed alpha
Helix 12
AB3
A
243 261Right-handed alpha
Helix 13
AB4
A
265 270Right-handed alpha
Helix 14
AB5
A
271 285Right-handed alpha
Helix 15
AB6
A
286 316Right-handed alpha
Helix 16
AB7
A
319 324Right-handed 310
Helix 17
AB8
A
328 347Right-handed alpha
Helix 18
AB9
A
350 357Right-handed alpha
Helix 19
AC1
A
358 362Right-handed 310
Helix 20
AC2
A
370 380Right-handed alpha
Helix 21
AC3
A
390 413Right-handed alpha
Helix 22
AC4
A
425 435Right-handed alpha
Helix 23
AC5
A
444 452Right-handed alpha
Helix 24
AC6
A
467 472Right-handed alpha
Helix 25
AC7
A
481 488Right-handed 310
Helix 26
AC8
A
489 493Right-handed 310
Helix 27
AC9
A
494 508Right-handed alpha
Helix 28
AD1
A
510 514Right-handed 310
Helix 29
AD2
A
516 523Right-handed alpha
Helix 30
AD3
A
530 539Right-handed alpha
Helix 31
AD4
A
568 586Right-handed alpha
Helix 32
AD5
A
590 595Right-handed alpha
Helix 33
AD6
A
639 643Right-handed 310
Helix 34
AD7
A
644 660Right-handed alpha
Helix 35
AD8
A
667 672Right-handed alpha
Helix 36
AD9
A
673 675Right-handed 310
Helix 37
AE1
A
693 697Right-handed 310
Helix 38
AE2
A
715 734Right-handed alpha
Helix 39
AE3
A
763 785Right-handed alpha
Helix 40
AE4
A
802 806Right-handed 310
Helix 41
AE5
A
834 847Right-handed alpha
Helix 42
AE6
A
847 852Right-handed alpha
Helix 43
AE7
A
856 874Right-handed alpha
Helix 44
AE8
A
883 901Right-handed alpha
Helix 45
AE9
A
905 913Right-handed alpha
Helix 46
AF1
A
914 915Right-handed 310
Helix 47
AF2
A
916 920Right-handed 310
Helix 48
AF3
A
926 931Right-handed 310
Helix 49
AF4
A
937 953Right-handed alpha
Helix 50
AF5
A
957 970Right-handed alpha
Helix 51
AF6
A
979 985Right-handed alpha
Helix 52
AF7
A
997 1012Right-handed alpha
Helix 53
AF8
A
1015 1033Right-handed alpha
Helix 54
AF9
A
1043 1053Right-handed alpha
Helix 55
AG1
A
1055 1068Right-handed alpha
Helix 56
AG2
A
1084 1097Right-handed alpha
Helix 57
AG3
A
1099 1105Right-handed alpha
Helix 58
AG4
A
1123 1135Right-handed alpha
Helix 59
AG5
A
1207 1224Right-handed alpha
Helix 60
AG6
A
1229 1242Right-handed alpha
Helix 61
AG7
A
1245 1250Right-handed alpha
Helix 62
AG8
A
1251 1253Right-handed 310
Helix 63
AG9
A
1260 1265Right-handed alpha
Helix 64
AH1
A
1279 1284Right-handed 310
Helix 65
AH2
A
1290 1301Right-handed alpha
Helix 66
AH3
A
1309 1328Right-handed alpha
Helix 67
AH4
A
1341 1344Right-handed 310
Helix 68
AH5
A
1358 1368Right-handed alpha
Helix 69
AH6
A
1369 1372Right-handed 310
Helix 70
AH7
B
173 193Right-handed alpha
Helix 71
AH8
B
214 226Right-handed alpha
Helix 72
AH9
B
228 239Right-handed alpha
Helix 73
AI1
B
254 263Right-handed alpha
Helix 74
AI2
C
176 198Right-handed alpha
Helix 75
AI3
C
199 205Right-handed alpha
Helix 76
AI4
C
207 213Right-handed alpha
Helix 77
AI5
C
217 233Right-handed alpha
Helix 78
AI6
D
173 193Right-handed alpha
Helix 79
AI7
D
202 204Right-handed 310
Helix 80
AI8
D
205 218Right-handed alpha
Helix 81
AI9
E
174 191Right-handed alpha
Helix 82
AJ1
E
205 226Right-handed alpha
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There are 9 sheets in PDB entry 8FPJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
1082 1083anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
A
197 201parallel
Strand 3
A
188 192anti-parallel
Strand 4
A
179 183anti-parallel
Strand 5
A
172 176anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 389first strand
Strand 2
B
194 196anti-parallel
Strand 3
B
211 213anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 551first strand
Strand 2
A
565 566anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
737 743first strand
Strand 2
A
746 754anti-parallel
Strand 3
A
627 632anti-parallel
Strand 4
A
796 797anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
807 809first strand
Strand 2
A
812 814anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1153 1157first strand
Strand 2
A
1334 1339anti-parallel
Strand 3
A
1166 1170anti-parallel
Strand 4
A
1286 1289anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1196 1197first strand
Strand 2
A
1255 1256anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 200first strand
Strand 2
B
207 208anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il