Analysis of interatomic Contacts of Structural Units in PDB entry:
8FPY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FPY entry

There are 4 chains in PDB entry 8FPY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 393	ALA 775
B	LYS 393	CYS 773
C	LYS 393	ALA 775
D	LYS 393	CYS 773

There are 44 helices in PDB entry 8FPY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	411	415	Right-handed 310
Helix 2	AA2	A	416	421	Right-handed 310
Helix 3	AA3	A	423	437	Right-handed alpha
Helix 4	AA4	A	462	469	Right-handed alpha
Helix 5	AA5	A	482	487	Right-handed alpha
Helix 6	AA6	A	635	642	Right-handed alpha
Helix 7	AA7	A	654	661	Right-handed alpha
Helix 8	AA8	A	664	676	Right-handed alpha
Helix 9	AA9	A	685	695	Right-handed alpha
Helix 10	AB1	A	706	714	Right-handed alpha
Helix 11	AB2	A	742	756	Right-handed alpha
Helix 12	AB3	A	757	768	Right-handed alpha
Helix 13	AB4	B	416	419	Right-handed 310
Helix 14	AB5	B	423	436	Right-handed alpha
Helix 15	AB6	B	462	469	Right-handed alpha
Helix 16	AB7	B	482	487	Right-handed alpha
Helix 17	AB8	B	635	642	Right-handed alpha
Helix 18	AB9	B	653	662	Right-handed alpha
Helix 19	AC1	B	664	676	Right-handed alpha
Helix 20	AC2	B	685	695	Right-handed alpha
Helix 21	AC3	B	706	714	Right-handed alpha
Helix 22	AC4	B	742	756	Right-handed alpha
Helix 23	AC5	B	757	768	Right-handed alpha
Helix 24	AC6	C	416	419	Right-handed 310
Helix 25	AC7	C	423	437	Right-handed alpha
Helix 26	AC8	C	461	469	Right-handed alpha
Helix 27	AC9	C	482	487	Right-handed alpha
Helix 28	AD1	C	635	642	Right-handed alpha
Helix 29	AD2	C	654	661	Right-handed alpha
Helix 30	AD3	C	664	676	Right-handed alpha
Helix 31	AD4	C	685	695	Right-handed alpha
Helix 32	AD5	C	706	715	Right-handed alpha
Helix 33	AD6	C	742	756	Right-handed alpha
Helix 34	AD7	C	757	768	Right-handed alpha
Helix 35	AD8	D	424	436	Right-handed alpha
Helix 36	AD9	D	462	469	Right-handed alpha
Helix 37	AE1	D	482	487	Right-handed alpha
Helix 38	AE2	D	636	642	Right-handed alpha
Helix 39	AE3	D	653	662	Right-handed alpha
Helix 40	AE4	D	664	676	Right-handed alpha
Helix 41	AE5	D	685	696	Right-handed alpha
Helix 42	AE6	D	706	715	Right-handed alpha
Helix 43	AE7	D	742	756	Right-handed alpha
Helix 44	AE8	D	757	768	Right-handed alpha

There are 20 sheets in PDB entry 8FPY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	444	first strand
Strand 2	A	394	399	parallel
Strand 3	A	474	480	parallel
Strand 4	A	730	737	anti-parallel
Strand 5	A	489	491	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	444	first strand
Strand 2	A	394	399	parallel
Strand 3	A	474	480	parallel
Strand 4	A	730	737	anti-parallel
Strand 5	A	496	498	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	646	648	first strand
Strand 2	A	700	705	parallel
Strand 3	A	500	505	anti-parallel
Strand 4	A	720	723	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	439	444	first strand
Strand 2	B	394	399	parallel
Strand 3	B	474	475	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	421	422	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	453	first strand
Strand 2	B	460	461	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	491	first strand
Strand 2	B	735	737	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	496	498	first strand
Strand 2	B	730	732	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	648	first strand
Strand 2	B	700	705	parallel
Strand 3	B	500	505	anti-parallel
Strand 4	B	720	723	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	439	444	first strand
Strand 2	C	394	399	parallel
Strand 3	C	474	475	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	408	first strand
Strand 2	C	421	422	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	489	491	first strand
Strand 2	C	735	737	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	498	first strand
Strand 2	C	730	732	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	646	648	first strand
Strand 2	C	700	705	parallel
Strand 3	C	500	505	anti-parallel
Strand 4	C	720	723	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	395	399	first strand
Strand 2	D	440	444	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	408	first strand
Strand 2	D	421	422	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	452	453	first strand
Strand 2	D	460	461	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	489	491	first strand
Strand 2	D	735	737	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	496	498	first strand
Strand 2	D	730	732	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	648	first strand
Strand 2	D	700	705	parallel
Strand 3	D	500	505	anti-parallel
Strand 4	D	720	723	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FPY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FPY