Analysis of interatomic Contacts of Structural Units in PDB entry:
8FQB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FQB entry

There are 8 chains in PDB entry 8FQB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 511	LYS 826
B	PRO 507	LYS 826
C	LYS 511	LYS 826
D	PRO 507	LYS 826
E	ASP 5	ALA 214
G	ASP 5	ALA 214
F	ASP 5	ASP 216
H	ASP 5	ASP 216

There are 50 helices in PDB entry 8FQB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	515	519	Right-handed 310
Helix 2	AA2	A	522	546	Right-handed alpha
Helix 3	AA3	A	547	549	Right-handed 310
Helix 4	AA4	A	572	585	Right-handed alpha
Helix 5	AA5	A	595	625	Right-handed alpha
Helix 6	AA6	A	788	791	Right-handed 310
Helix 7	AA7	A	792	826	Right-handed alpha
Helix 8	AA8	B	515	519	Right-handed 310
Helix 9	AA9	B	522	546	Right-handed alpha
Helix 10	AB1	B	547	551	Right-handed 310
Helix 11	AB2	B	572	585	Right-handed alpha
Helix 12	AB3	B	595	618	Right-handed alpha
Helix 13	AB4	B	619	625	Right-handed alpha
Helix 14	AB5	B	788	791	Right-handed 310
Helix 15	AB6	B	792	826	Right-handed alpha
Helix 16	AB7	C	515	519	Right-handed 310
Helix 17	AB8	C	522	546	Right-handed alpha
Helix 18	AB9	C	547	549	Right-handed 310
Helix 19	AC1	C	572	585	Right-handed alpha
Helix 20	AC2	C	595	625	Right-handed alpha
Helix 21	AC3	C	788	791	Right-handed 310
Helix 22	AC4	C	792	826	Right-handed alpha
Helix 23	AC5	D	515	519	Right-handed 310
Helix 24	AC6	D	522	546	Right-handed alpha
Helix 25	AC7	D	547	551	Right-handed 310
Helix 26	AC8	D	572	585	Right-handed alpha
Helix 27	AC9	D	595	618	Right-handed alpha
Helix 28	AD1	D	619	625	Right-handed alpha
Helix 29	AD2	D	788	791	Right-handed 310
Helix 30	AD3	D	792	826	Right-handed alpha
Helix 31	AD4	E	6	30	Right-handed alpha
Helix 32	AD5	E	92	105	Right-handed alpha
Helix 33	AD6	E	105	128	Right-handed alpha
Helix 34	AD7	E	132	162	Right-handed alpha
Helix 35	AD8	E	177	214	Right-handed alpha
Helix 36	AD9	G	6	30	Right-handed alpha
Helix 37	AE1	G	92	105	Right-handed alpha
Helix 38	AE2	G	105	128	Right-handed alpha
Helix 39	AE3	G	132	162	Right-handed alpha
Helix 40	AE4	G	177	214	Right-handed alpha
Helix 41	AE5	F	6	30	Right-handed alpha
Helix 42	AE6	F	92	105	Right-handed alpha
Helix 43	AE7	F	105	129	Right-handed alpha
Helix 44	AE8	F	132	162	Right-handed alpha
Helix 45	AE9	F	177	216	Right-handed alpha
Helix 46	AF1	H	6	30	Right-handed alpha
Helix 47	AF2	H	92	105	Right-handed alpha
Helix 48	AF3	H	105	129	Right-handed alpha
Helix 49	AF4	H	132	162	Right-handed alpha
Helix 50	AF5	H	177	216	Right-handed alpha

There are 6 sheets in PDB entry 8FQB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	551	552	first strand
Strand 2	A	566	567	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	551	552	first strand
Strand 2	C	566	567	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	38	first strand
Strand 2	E	57	61	anti-parallel
Strand 3	E	65	68	anti-parallel
Strand 4	E	77	79	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	34	38	first strand
Strand 2	G	57	61	anti-parallel
Strand 3	G	65	68	anti-parallel
Strand 4	G	77	79	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	77	79	first strand
Strand 2	F	65	68	anti-parallel
Strand 3	F	57	61	anti-parallel
Strand 4	F	34	38	anti-parallel
Strand 5	F	175	176	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	77	79	first strand
Strand 2	H	65	68	anti-parallel
Strand 3	H	57	61	anti-parallel
Strand 4	H	34	38	anti-parallel
Strand 5	H	175	176	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FQB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FQB