Analysis of interatomic Contacts of Structural Units in PDB entry:
8FQT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FQT entry

There are 2 chains in PDB entry 8FQT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASN 1LYS 360
A
 THR 2LYS 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 8FQT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
3 16Right-handed alpha
Helix 2
AA2
B
16 23Right-handed alpha
Helix 3
AA3
B
65 80Right-handed alpha
Helix 4
AA4
B
88 92Right-handed 310
Helix 5
AA5
B
93 97Right-handed 310
Helix 6
AA6
B
99 104Right-handed 310
Helix 7
AA7
B
105 111Right-handed alpha
Helix 8
AA8
B
127 137Right-handed alpha
Helix 9
AA9
B
151 166Right-handed alpha
Helix 10
AB1
B
169 177Right-handed alpha
Helix 11
AB2
B
177 182Right-handed alpha
Helix 12
AB3
B
192 199Right-handed 310
Helix 13
AB4
B
228 241Right-handed alpha
Helix 14
AB5
B
242 245Right-handed 310
Helix 15
AB6
B
246 258Right-handed alpha
Helix 16
AB7
B
280 287Right-handed alpha
Helix 17
AB8
B
289 295Right-handed alpha
Helix 18
AB9
B
328 330Right-handed 310
Helix 19
AC1
B
343 358Right-handed alpha
Helix 20
AC2
A
3 24Right-handed alpha
Helix 21
AC3
A
65 80Right-handed alpha
Helix 22
AC4
A
88 92Right-handed 310
Helix 23
AC5
A
93 97Right-handed 310
Helix 24
AC6
A
99 104Right-handed 310
Helix 25
AC7
A
105 111Right-handed alpha
Helix 26
AC8
A
127 138Right-handed alpha
Helix 27
AC9
A
151 166Right-handed alpha
Helix 28
AD1
A
169 177Right-handed alpha
Helix 29
AD2
A
177 182Right-handed alpha
Helix 30
AD3
A
192 199Right-handed 310
Helix 31
AD4
A
228 241Right-handed alpha
Helix 32
AD5
A
242 245Right-handed 310
Helix 33
AD6
A
246 257Right-handed alpha
Helix 34
AD7
A
280 287Right-handed alpha
Helix 35
AD8
A
289 295Right-handed alpha
Helix 36
AD9
A
343 358Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 8FQT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 53first strand
Strand 2
B
37 47anti-parallel
Strand 3
B
27 34anti-parallel
Strand 4
B
332 338anti-parallel
Strand 5
B
320 327anti-parallel
Strand 6
B
309 317anti-parallel
Strand 7
B
273 276anti-parallel
Strand 8
B
266 268anti-parallel
Strand 9
B
261 263anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
226 227anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 148first strand
Strand 2
B
297 298anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 203first strand
Strand 2
B
209 210anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
37 47anti-parallel
Strand 3
A
27 34anti-parallel
Strand 4
A
332 338anti-parallel
Strand 5
A
320 327anti-parallel
Strand 6
A
309 317anti-parallel
Strand 7
A
273 276anti-parallel
Strand 8
A
266 268anti-parallel
Strand 9
A
261 263anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
226 227anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
297 298anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
209 210anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il