Analysis of interatomic Contacts of Structural Units in PDB entry:
8FQV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FQV entry

There are 2 chains in PDB entry 8FQV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASN 1LYS 359
A
 THR 2LYS 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 8FQV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
3 16Right-handed alpha
Helix 2
AA2
B
16 23Right-handed alpha
Helix 3
AA3
B
65 80Right-handed alpha
Helix 4
AA4
B
88 92Right-handed 310
Helix 5
AA5
B
93 97Right-handed 310
Helix 6
AA6
B
99 104Right-handed 310
Helix 7
AA7
B
105 111Right-handed alpha
Helix 8
AA8
B
127 137Right-handed alpha
Helix 9
AA9
B
151 166Right-handed alpha
Helix 10
AB1
B
169 177Right-handed alpha
Helix 11
AB2
B
177 182Right-handed alpha
Helix 12
AB3
B
192 199Right-handed 310
Helix 13
AB4
B
217 223Right-handed alpha
Helix 14
AB5
B
227 240Right-handed alpha
Helix 15
AB6
B
241 244Right-handed 310
Helix 16
AB7
B
245 256Right-handed alpha
Helix 17
AB8
B
279 286Right-handed alpha
Helix 18
AB9
B
288 294Right-handed alpha
Helix 19
AC1
B
327 329Right-handed 310
Helix 20
AC2
B
342 357Right-handed alpha
Helix 21
AC3
A
3 16Right-handed alpha
Helix 22
AC4
A
16 24Right-handed alpha
Helix 23
AC5
A
65 80Right-handed alpha
Helix 24
AC6
A
88 92Right-handed 310
Helix 25
AC7
A
93 97Right-handed 310
Helix 26
AC8
A
99 104Right-handed 310
Helix 27
AC9
A
105 111Right-handed alpha
Helix 28
AD1
A
127 138Right-handed alpha
Helix 29
AD2
A
151 166Right-handed alpha
Helix 30
AD3
A
169 177Right-handed alpha
Helix 31
AD4
A
177 182Right-handed alpha
Helix 32
AD5
A
192 199Right-handed 310
Helix 33
AD6
A
217 223Right-handed alpha
Helix 34
AD7
A
228 240Right-handed alpha
Helix 35
AD8
A
241 244Right-handed 310
Helix 36
AD9
A
245 255Right-handed alpha
Helix 37
AE1
A
279 286Right-handed alpha
Helix 38
AE2
A
288 294Right-handed alpha
Helix 39
AE3
A
327 329Right-handed 310
Helix 40
AE4
A
342 357Right-handed alpha
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There are 8 sheets in PDB entry 8FQV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 53first strand
Strand 2
B
37 47anti-parallel
Strand 3
B
27 34anti-parallel
Strand 4
B
331 337anti-parallel
Strand 5
B
319 326anti-parallel
Strand 6
B
308 316anti-parallel
Strand 7
B
272 275anti-parallel
Strand 8
B
265 267anti-parallel
Strand 9
B
260 262anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
225 226anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 148first strand
Strand 2
B
296 297anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 203first strand
Strand 2
B
209 210anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
37 47anti-parallel
Strand 3
A
27 34anti-parallel
Strand 4
A
331 337anti-parallel
Strand 5
A
319 326anti-parallel
Strand 6
A
308 316anti-parallel
Strand 7
A
272 275anti-parallel
Strand 8
A
265 267anti-parallel
Strand 9
A
260 262anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
225 227anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
296 297anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
209 210anti-parallel
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