Analysis of interatomic Contacts of Structural Units in PDB entry:
8FRD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FRD entry

There are 2 chains in PDB entry 8FRD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 22SER 390
B
 TYR 22SER 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8FRD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 35Right-handed 310
Helix 2
AA2
A
36 40Right-handed 310
Helix 3
AA3
A
42 46Right-handed 310
Helix 4
AA4
A
72 82Right-handed alpha
Helix 5
AA5
A
83 87Right-handed 310
Helix 6
AA6
A
99 102Right-handed 310
Helix 7
AA7
A
103 111Right-handed alpha
Helix 8
AA8
A
112 131Right-handed alpha
Helix 9
AA9
A
150 174Right-handed alpha
Helix 10
AB1
A
187 195Right-handed alpha
Helix 11
AB2
A
196 204Right-handed alpha
Helix 12
AB3
A
216 220Right-handed 310
Helix 13
AB4
A
235 241Right-handed 310
Helix 14
AB5
A
242 253Right-handed alpha
Helix 15
AB6
A
256 258Right-handed 310
Helix 16
AB7
A
303 312Right-handed alpha
Helix 17
AB8
A
338 352Right-handed alpha
Helix 18
AB9
A
361 365Right-handed 310
Helix 19
AC1
A
377 387Right-handed alpha
Helix 20
AC2
B
31 35Right-handed 310
Helix 21
AC3
B
36 40Right-handed 310
Helix 22
AC4
B
42 46Right-handed 310
Helix 23
AC5
B
72 82Right-handed alpha
Helix 24
AC6
B
83 86Right-handed 310
Helix 25
AC7
B
103 111Right-handed alpha
Helix 26
AC8
B
112 131Right-handed alpha
Helix 27
AC9
B
150 174Right-handed alpha
Helix 28
AD1
B
187 195Right-handed alpha
Helix 29
AD2
B
196 204Right-handed alpha
Helix 30
AD3
B
216 220Right-handed 310
Helix 31
AD4
B
236 241Right-handed 310
Helix 32
AD5
B
242 253Right-handed alpha
Helix 33
AD6
B
256 258Right-handed 310
Helix 34
AD7
B
303 311Right-handed alpha
Helix 35
AD8
B
338 352Right-handed alpha
Helix 36
AD9
B
361 365Right-handed 310
Helix 37
AE1
B
377 388Right-handed alpha
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There are 6 sheets in PDB entry 8FRD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
53 62anti-parallel
Strand 3
A
91 97parallel
Strand 4
A
134 138parallel
Strand 5
A
179 184parallel
Strand 6
A
206 209parallel
Strand 7
A
260 265parallel
Strand 8
A
356 360parallel
Strand 9
A
23 29parallel
Strand 10
A
53 62parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 286first strand
Strand 2
A
267 273anti-parallel
Strand 3
A
300 302anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 286first strand
Strand 2
A
267 273anti-parallel
Strand 3
A
332 335anti-parallel
Strand 4
A
324 329anti-parallel
Strand 5
A
315 319anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 67first strand
Strand 2
B
53 62anti-parallel
Strand 3
B
91 97parallel
Strand 4
B
134 138parallel
Strand 5
B
179 184parallel
Strand 6
B
206 209parallel
Strand 7
B
260 265parallel
Strand 8
B
356 360parallel
Strand 9
B
23 29parallel
Strand 10
B
53 62parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
285 288first strand
Strand 2
B
267 273anti-parallel
Strand 3
B
300 302anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
285 288first strand
Strand 2
B
267 273anti-parallel
Strand 3
B
332 335anti-parallel
Strand 4
B
324 329anti-parallel
Strand 5
B
315 319anti-parallel
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