Analysis of interatomic Contacts of Structural Units in PDB entry:
8FRP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FRP entry

There are 5 chains in PDB entry 8FRP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 10	THR 248
B	GLN 10	PHE 247
C	UNK 1	UNK 21
F	ILE 2	LYS 350
G	ARG 4	ALA 355

There are 45 helices in PDB entry 8FRP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	59	Right-handed alpha
Helix 2	AA2	A	79	85	Right-handed alpha
Helix 3	AA3	A	102	112	Right-handed alpha
Helix 4	AA4	A	118	133	Right-handed alpha
Helix 5	AA5	A	147	162	Right-handed alpha
Helix 6	AA6	A	177	194	Right-handed alpha
Helix 7	AA7	A	204	209	Right-handed alpha
Helix 8	AA8	A	228	235	Right-handed alpha
Helix 9	AA9	A	235	242	Right-handed alpha
Helix 10	AB1	B	49	59	Right-handed alpha
Helix 11	AB2	B	79	85	Right-handed alpha
Helix 12	AB3	B	102	112	Right-handed alpha
Helix 13	AB4	B	118	133	Right-handed alpha
Helix 14	AB5	B	135	139	Right-handed 310
Helix 15	AB6	B	142	146	Right-handed 310
Helix 16	AB7	B	147	161	Right-handed alpha
Helix 17	AB8	B	180	194	Right-handed alpha
Helix 18	AB9	B	204	209	Right-handed alpha
Helix 19	AC1	B	228	234	Right-handed alpha
Helix 20	AC2	B	235	242	Right-handed alpha
Helix 21	AC3	C	2	21	Right-handed alpha
Helix 22	AC4	F	3	36	Right-handed alpha
Helix 23	AC5	F	50	55	Right-handed alpha
Helix 24	AC6	F	55	82	Right-handed alpha
Helix 25	AC7	F	85	90	Right-handed alpha
Helix 26	AC8	F	94	101	Right-handed alpha
Helix 27	AC9	F	102	119	Right-handed alpha
Helix 28	AD1	F	119	132	Right-handed alpha
Helix 29	AD2	F	247	251	Right-handed 310
Helix 30	AD3	F	252	257	Right-handed alpha
Helix 31	AD4	F	262	274	Right-handed alpha
Helix 32	AD5	F	277	289	Right-handed alpha
Helix 33	AD6	F	301	325	Right-handed alpha
Helix 34	AD7	F	331	348	Right-handed alpha
Helix 35	AD8	G	5	35	Right-handed alpha
Helix 36	AD9	G	50	58	Right-handed alpha
Helix 37	AE1	G	58	85	Right-handed alpha
Helix 38	AE2	G	86	93	Right-handed alpha
Helix 39	AE3	G	97	123	Right-handed alpha
Helix 40	AE4	G	123	135	Right-handed alpha
Helix 41	AE5	G	246	261	Right-handed alpha
Helix 42	AE6	G	264	276	Right-handed alpha
Helix 43	AE7	G	276	294	Right-handed alpha
Helix 44	AE8	G	300	327	Right-handed alpha
Helix 45	AE9	G	332	354	Right-handed alpha

There are 4 sheets in PDB entry 8FRP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	35	first strand
Strand 2	A	11	21	anti-parallel
Strand 3	A	65	70	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	91	first strand
Strand 2	A	166	170	parallel
Strand 3	A	197	201	parallel
Strand 4	A	39	43	parallel
Strand 5	A	214	219	parallel
Strand 6	A	222	227	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	35	first strand
Strand 2	B	11	21	anti-parallel
Strand 3	B	65	70	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	91	first strand
Strand 2	B	166	170	parallel
Strand 3	B	197	201	parallel
Strand 4	B	39	43	parallel
Strand 5	B	214	219	parallel
Strand 6	B	222	227	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FRP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FRP