Analysis of interatomic Contacts of Structural Units in PDB entry:
8FRT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FRT entry

There is 1 chain in PDB entry 8FRT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1TRP 447
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 8FRT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
222 226Right-handed 310
Helix 2
AA2
A
229 259Right-handed alpha
Helix 3
AA3
A
310 323Right-handed alpha
Helix 4
AA4
A
324 335Right-handed alpha
Helix 5
AA5
A
335 348Right-handed alpha
Helix 6
AA6
A
348 353Right-handed alpha
Helix 7
AA7
A
426 428Right-handed 310
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There are 7 sheets in PDB entry 8FRT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 56first strand
Strand 2
A
66 75anti-parallel
Strand 3
A
107 115anti-parallel
Strand 4
A
95 96anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 56first strand
Strand 2
A
66 75anti-parallel
Strand 3
A
107 115anti-parallel
Strand 4
A
100 101anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
A
81 86anti-parallel
Strand 3
A
123 128anti-parallel
Strand 4
A
136 139anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 220first strand
Strand 2
A
204 210anti-parallel
Strand 3
A
194 201anti-parallel
Strand 4
A
176 185anti-parallel
Strand 5
A
267 276anti-parallel
Strand 6
A
282 291anti-parallel
Strand 7
A
294 299anti-parallel
Strand 8
A
306 308anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 366first strand
Strand 2
A
371 381anti-parallel
Strand 3
A
414 423anti-parallel
Strand 4
A
401 403anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 366first strand
Strand 2
A
371 381anti-parallel
Strand 3
A
414 423anti-parallel
Strand 4
A
407 408anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 397first strand
Strand 2
A
387 392anti-parallel
Strand 3
A
430 435anti-parallel
Strand 4
A
443 446anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il