Analysis of interatomic Contacts of Structural Units in PDB entry:
8FS8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FS8 entry

There are 11 chains in PDB entry 8FS8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 63	LYS 499
B	LEU 5	ALA 323
C	SER 9	THR 335
D	GLN 24	LEU 353
E	SER 2	ASP 354
F	MET 1	LEU 474
G	ASN 9	THR 330
H	SER 2	ILE 381
I	G 11	C 40
J	G 6	G 20
K	G 1	C 10

There are111 helices in PDB entry 8FS8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	81	96	Right-handed alpha
Helix 2	AA2	A	116	131	Right-handed alpha
Helix 3	AA3	A	161	173	Right-handed alpha
Helix 4	AA4	A	174	176	Right-handed 310
Helix 5	AA5	A	194	211	Right-handed alpha
Helix 6	AA6	A	251	256	Right-handed alpha
Helix 7	AA7	A	269	284	Right-handed alpha
Helix 8	AA8	A	285	291	Right-handed alpha
Helix 9	AA9	A	296	308	Right-handed alpha
Helix 10	AB1	A	310	324	Right-handed alpha
Helix 11	AB2	A	338	348	Right-handed alpha
Helix 12	AB3	A	355	367	Right-handed alpha
Helix 13	AB4	A	367	372	Right-handed alpha
Helix 14	AB5	A	373	384	Right-handed alpha
Helix 15	AB6	A	385	391	Right-handed 310
Helix 16	AB7	A	393	409	Right-handed alpha
Helix 17	AB8	A	413	431	Right-handed alpha
Helix 18	AB9	A	446	471	Right-handed alpha
Helix 19	AC1	A	476	483	Right-handed alpha
Helix 20	AC2	A	483	497	Right-handed alpha
Helix 21	AC3	B	10	15	Right-handed alpha
Helix 22	AC4	B	26	40	Right-handed alpha
Helix 23	AC5	B	54	68	Right-handed alpha
Helix 24	AC6	B	70	75	Right-handed alpha
Helix 25	AC7	B	85	99	Right-handed alpha
Helix 26	AC8	B	116	119	Right-handed 310
Helix 27	AC9	B	120	134	Right-handed alpha
Helix 28	AD1	B	146	150	Right-handed 310
Helix 29	AD2	B	151	157	Right-handed alpha
Helix 30	AD3	B	169	183	Right-handed alpha
Helix 31	AD4	B	187	199	Right-handed alpha
Helix 32	AD5	B	201	217	Right-handed alpha
Helix 33	AD6	B	220	226	Right-handed alpha
Helix 34	AD7	B	231	241	Right-handed alpha
Helix 35	AD8	B	244	256	Right-handed alpha
Helix 36	AD9	B	262	276	Right-handed alpha
Helix 37	AE1	B	281	302	Right-handed alpha
Helix 38	AE2	B	305	322	Right-handed alpha
Helix 39	AE3	C	23	27	Right-handed 310
Helix 40	AE4	C	30	43	Right-handed alpha
Helix 41	AE5	C	58	71	Right-handed alpha
Helix 42	AE6	C	74	78	Right-handed alpha
Helix 43	AE7	C	89	102	Right-handed alpha
Helix 44	AE8	C	123	137	Right-handed alpha
Helix 45	AE9	C	149	153	Right-handed 310
Helix 46	AF1	C	154	160	Right-handed alpha
Helix 47	AF2	C	170	186	Right-handed alpha
Helix 48	AF3	C	190	202	Right-handed alpha
Helix 49	AF4	C	204	219	Right-handed alpha
Helix 50	AF5	C	228	235	Right-handed alpha
Helix 51	AF6	C	240	253	Right-handed alpha
Helix 52	AF7	C	255	270	Right-handed alpha
Helix 53	AF8	C	273	287	Right-handed alpha
Helix 54	AF9	C	292	312	Right-handed alpha
Helix 55	AG1	C	315	331	Right-handed alpha
Helix 56	AG2	D	26	31	Right-handed alpha
Helix 57	AG3	D	42	55	Right-handed alpha
Helix 58	AG4	D	70	83	Right-handed alpha
Helix 59	AG5	D	84	91	Right-handed alpha
Helix 60	AG6	D	102	116	Right-handed alpha
Helix 61	AG7	D	122	129	Right-handed alpha
Helix 62	AG8	D	141	145	Right-handed 310
Helix 63	AG9	D	146	151	Right-handed alpha
Helix 64	AH1	D	152	160	Right-handed alpha
Helix 65	AH2	D	172	176	Right-handed 310
Helix 66	AH3	D	177	184	Right-handed alpha
Helix 67	AH4	D	197	208	Right-handed alpha
Helix 68	AH5	D	217	224	Right-handed alpha
Helix 69	AH6	D	228	246	Right-handed alpha
Helix 70	AH7	D	252	261	Right-handed alpha
Helix 71	AH8	D	264	277	Right-handed alpha
Helix 72	AH9	D	279	294	Right-handed alpha
Helix 73	AI1	D	296	311	Right-handed alpha
Helix 74	AI2	D	315	335	Right-handed alpha
Helix 75	AI3	D	338	352	Right-handed alpha
Helix 76	AI4	E	3	8	Right-handed alpha
Helix 77	AI5	E	20	32	Right-handed alpha
Helix 78	AI6	E	48	62	Right-handed alpha
Helix 79	AI7	E	104	118	Right-handed alpha
Helix 80	AI8	E	143	146	Right-handed 310
Helix 81	AI9	E	147	161	Right-handed alpha
Helix 82	AJ1	E	178	185	Right-handed alpha
Helix 83	AJ2	E	194	209	Right-handed alpha
Helix 84	AJ3	E	216	227	Right-handed alpha
Helix 85	AJ4	E	229	244	Right-handed alpha
Helix 86	AJ5	E	257	273	Right-handed alpha
Helix 87	AJ6	E	275	292	Right-handed alpha
Helix 88	AJ7	E	295	309	Right-handed alpha
Helix 89	AJ8	E	314	334	Right-handed alpha
Helix 90	AJ9	E	337	354	Right-handed alpha
Helix 91	AK1	F	14	30	Right-handed alpha
Helix 92	AK2	F	75	77	Right-handed 310
Helix 93	AK3	F	86	90	Right-handed 310
Helix 94	AK4	F	96	113	Right-handed alpha
Helix 95	AK5	F	213	220	Right-handed alpha
Helix 96	AK6	F	240	252	Right-handed alpha
Helix 97	AK7	F	412	425	Right-handed alpha
Helix 98	AK8	G	18	27	Right-handed alpha
Helix 99	AK9	G	65	67	Right-handed 310
Helix 100	AL1	G	86	94	Right-handed alpha
Helix 101	AL2	G	160	173	Right-handed alpha
Helix 102	AL3	G	239	243	Right-handed alpha
Helix 103	AL4	G	244	246	Right-handed 310
Helix 104	AL5	G	317	329	Right-handed alpha
Helix 105	AL6	H	9	27	Right-handed alpha
Helix 106	AL7	H	59	61	Right-handed 310
Helix 107	AL8	H	98	102	Right-handed alpha
Helix 108	AL9	H	162	167	Right-handed alpha
Helix 109	AM1	H	234	244	Right-handed alpha
Helix 110	AM2	H	326	336	Right-handed alpha
Helix 111	AM3	H	337	339	Right-handed 310

There are 15 sheets in PDB entry 8FS8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	186	first strand
Strand 2	A	219	221	parallel
Strand 3	A	104	105	parallel
Strand 4	A	260	261	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	223	224	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	114	first strand
Strand 2	B	141	144	parallel
Strand 3	B	45	48	parallel
Strand 4	B	159	162	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	82	first strand
Strand 2	C	112	116	parallel
Strand 3	C	141	147	parallel
Strand 4	C	49	52	parallel
Strand 5	C	162	165	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	95	first strand
Strand 2	D	135	139	parallel
Strand 3	D	164	170	parallel
Strand 4	D	61	64	parallel
Strand 5	D	185	188	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	72	first strand
Strand 2	E	86	90	anti-parallel
Strand 3	E	93	96	anti-parallel
Strand 4	E	136	141	parallel
Strand 5	E	165	171	parallel
Strand 6	E	39	42	parallel
Strand 7	E	186	189	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	119	124	anti-parallel
Strand 3	F	155	156	anti-parallel
Strand 4	F	201	208	anti-parallel
Strand 5	F	159	162	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	119	124	anti-parallel
Strand 3	F	155	156	anti-parallel
Strand 4	F	201	208	anti-parallel
Strand 5	H	283	287	anti-parallel
Strand 6	H	261	265	anti-parallel
Strand 7	H	251	256	anti-parallel
Strand 8	H	321	325	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	95	first strand
Strand 2	F	33	37	anti-parallel
Strand 3	F	41	45	anti-parallel
Strand 4	F	67	73	anti-parallel
Strand 5	F	462	468	anti-parallel
Strand 6	F	438	444	anti-parallel
Strand 7	F	427	432	anti-parallel
Strand 8	F	231	234	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	405	411	first strand
Strand 2	F	261	267	anti-parallel
Strand 3	F	280	284	anti-parallel
Strand 4	F	291	295	anti-parallel
Strand 5	G	129	131	anti-parallel
Strand 6	G	117	122	anti-parallel
Strand 7	G	105	110	anti-parallel
Strand 8	G	11	15	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	36	41	first strand
Strand 2	G	80	85	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	52	first strand
Strand 2	G	56	63	anti-parallel
Strand 3	G	305	311	anti-parallel
Strand 4	G	264	270	anti-parallel
Strand 5	G	254	260	anti-parallel
Strand 6	G	152	159	anti-parallel
Strand 7	G	214	219	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	233	238	first strand
Strand 2	G	177	185	anti-parallel
Strand 3	G	189	198	anti-parallel
Strand 4	G	201	206	anti-parallel
Strand 5	H	145	148	anti-parallel
Strand 6	H	135	140	anti-parallel
Strand 7	H	113	120	anti-parallel
Strand 8	H	3	7	anti-parallel
Strand 9	H	65	66	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	78	79	first strand
Strand 2	H	91	97	anti-parallel
Strand 3	H	153	155	anti-parallel

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There are 10 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	78	79	first strand
Strand 2	H	91	97	anti-parallel
Strand 3	H	29	35	anti-parallel
Strand 4	H	38	44	anti-parallel
Strand 5	H	50	57	anti-parallel
Strand 6	H	369	375	anti-parallel
Strand 7	H	360	365	anti-parallel
Strand 8	H	348	353	anti-parallel
Strand 9	H	228	233	anti-parallel
Strand 10	H	295	297	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FS8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FS8