Analysis of interatomic Contacts of Structural Units in PDB entry:
8FSE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FSE entry

There are 2 chains in PDB entry 8FSE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -9LYS 404
B
 ASN -9LYS 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8FSE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 36Right-handed alpha
Helix 2
AA2
A
37 41Right-handed 310
Helix 3
AA3
A
43 45Right-handed 310
Helix 4
AA4
A
55 59Right-handed 310
Helix 5
AA5
A
67 72Right-handed 310
Helix 6
AA6
A
107 119Right-handed alpha
Helix 7
AA7
A
123 125Right-handed 310
Helix 8
AA8
A
180 184Right-handed 310
Helix 9
AA9
A
208 225Right-handed alpha
Helix 10
AB1
A
231 248Right-handed alpha
Helix 11
AB2
A
261 265Right-handed 310
Helix 12
AB3
A
267 271Right-handed 310
Helix 13
AB4
A
272 273Right-handed 310
Helix 14
AB5
A
274 286Right-handed alpha
Helix 15
AB6
A
290 304Right-handed alpha
Helix 16
AB7
A
354 356Right-handed 310
Helix 17
AB8
A
370 374Right-handed 310
Helix 18
AB9
A
384 404Right-handed alpha
Helix 19
AC1
B
24 36Right-handed alpha
Helix 20
AC2
B
37 41Right-handed 310
Helix 21
AC3
B
43 45Right-handed 310
Helix 22
AC4
B
55 59Right-handed 310
Helix 23
AC5
B
67 72Right-handed 310
Helix 24
AC6
B
107 119Right-handed alpha
Helix 25
AC7
B
123 125Right-handed 310
Helix 26
AC8
B
180 184Right-handed 310
Helix 27
AC9
B
208 225Right-handed alpha
Helix 28
AD1
B
231 248Right-handed alpha
Helix 29
AD2
B
261 265Right-handed 310
Helix 30
AD3
B
267 271Right-handed 310
Helix 31
AD4
B
272 273Right-handed 310
Helix 32
AD5
B
274 285Right-handed alpha
Helix 33
AD6
B
290 305Right-handed alpha
Helix 34
AD7
B
354 356Right-handed 310
Helix 35
AD8
B
370 374Right-handed 310
Helix 36
AD9
B
384 402Right-handed alpha
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There are 8 sheets in PDB entry 8FSE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 19first strand
Strand 2
A
4 10anti-parallel
Strand 3
A
78 83parallel
Strand 4
A
47 51anti-parallel
Strand 5
A
60 61anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 103first strand
Strand 2
A
85 91anti-parallel
Strand 3
A
191 195parallel
Strand 4
A
127 130anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 317first strand
Strand 2
A
326 332anti-parallel
Strand 3
A
336 340anti-parallel
Strand 4
A
347 352anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 361first strand
Strand 2
A
365 369anti-parallel
Strand 3
A
378 381anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 19first strand
Strand 2
B
4 10anti-parallel
Strand 3
B
78 83parallel
Strand 4
B
47 51anti-parallel
Strand 5
B
60 61anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 103first strand
Strand 2
B
85 91anti-parallel
Strand 3
B
191 195parallel
Strand 4
B
127 130anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
311 317first strand
Strand 2
B
326 332anti-parallel
Strand 3
B
336 340anti-parallel
Strand 4
B
347 352anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
358 361first strand
Strand 2
B
365 369anti-parallel
Strand 3
B
378 381anti-parallel
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