Analysis of interatomic Contacts of Structural Units in PDB entry:
8FSP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FSP entry

There are 5 chains in PDB entry 8FSP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 7	LEU 465
B	THR 7	LEU 465
C	THR 7	LEU 465
D	THR 7	LEU 465
E	THR 7	LEU 465

There are 50 helices in PDB entry 8FSP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	21	Right-handed alpha
Helix 2	AA2	A	170	176	Right-handed alpha
Helix 3	AA3	A	221	235	Right-handed alpha
Helix 4	AA4	A	236	241	Right-handed alpha
Helix 5	AA5	A	247	273	Right-handed alpha
Helix 6	AA6	A	281	310	Right-handed alpha
Helix 7	AA7	A	319	332	Right-handed alpha
Helix 8	AA8	A	398	426	Right-handed alpha
Helix 9	AA9	A	426	432	Right-handed alpha
Helix 10	AB1	A	433	463	Right-handed alpha
Helix 11	AB2	B	10	21	Right-handed alpha
Helix 12	AB3	B	170	176	Right-handed alpha
Helix 13	AB4	B	221	235	Right-handed alpha
Helix 14	AB5	B	236	241	Right-handed alpha
Helix 15	AB6	B	247	273	Right-handed alpha
Helix 16	AB7	B	281	310	Right-handed alpha
Helix 17	AB8	B	319	332	Right-handed alpha
Helix 18	AB9	B	398	426	Right-handed alpha
Helix 19	AC1	B	426	432	Right-handed alpha
Helix 20	AC2	B	433	463	Right-handed alpha
Helix 21	AC3	C	10	21	Right-handed alpha
Helix 22	AC4	C	170	176	Right-handed alpha
Helix 23	AC5	C	221	235	Right-handed alpha
Helix 24	AC6	C	236	241	Right-handed alpha
Helix 25	AC7	C	247	273	Right-handed alpha
Helix 26	AC8	C	281	310	Right-handed alpha
Helix 27	AC9	C	319	332	Right-handed alpha
Helix 28	AD1	C	398	426	Right-handed alpha
Helix 29	AD2	C	426	432	Right-handed alpha
Helix 30	AD3	C	433	463	Right-handed alpha
Helix 31	AD4	D	10	21	Right-handed alpha
Helix 32	AD5	D	170	176	Right-handed alpha
Helix 33	AD6	D	221	235	Right-handed alpha
Helix 34	AD7	D	236	241	Right-handed alpha
Helix 35	AD8	D	247	273	Right-handed alpha
Helix 36	AD9	D	281	310	Right-handed alpha
Helix 37	AE1	D	319	332	Right-handed alpha
Helix 38	AE2	D	398	426	Right-handed alpha
Helix 39	AE3	D	426	432	Right-handed alpha
Helix 40	AE4	D	433	463	Right-handed alpha
Helix 41	AE5	E	10	21	Right-handed alpha
Helix 42	AE6	E	170	176	Right-handed alpha
Helix 43	AE7	E	221	235	Right-handed alpha
Helix 44	AE8	E	236	241	Right-handed alpha
Helix 45	AE9	E	247	273	Right-handed alpha
Helix 46	AF1	E	281	310	Right-handed alpha
Helix 47	AF2	E	319	332	Right-handed alpha
Helix 48	AF3	E	398	426	Right-handed alpha
Helix 49	AF4	E	426	432	Right-handed alpha
Helix 50	AF5	E	433	463	Right-handed alpha

There are 10 sheets in PDB entry 8FSP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	115	117	anti-parallel
Strand 3	A	122	133	anti-parallel
Strand 4	A	57	69	anti-parallel
Strand 5	A	37	52	anti-parallel
Strand 6	A	163	167	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	146	155	anti-parallel
Strand 3	A	207	218	anti-parallel
Strand 4	A	187	199	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	B	115	117	anti-parallel
Strand 3	B	122	133	anti-parallel
Strand 4	B	57	69	anti-parallel
Strand 5	B	37	52	anti-parallel
Strand 6	B	163	167	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	100	first strand
Strand 2	B	146	155	anti-parallel
Strand 3	B	207	218	anti-parallel
Strand 4	B	187	199	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	C	115	117	anti-parallel
Strand 3	C	122	133	anti-parallel
Strand 4	C	57	69	anti-parallel
Strand 5	C	37	52	anti-parallel
Strand 6	C	163	167	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	100	first strand
Strand 2	C	146	155	anti-parallel
Strand 3	C	207	218	anti-parallel
Strand 4	C	187	199	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	88	first strand
Strand 2	D	115	117	anti-parallel
Strand 3	D	122	133	anti-parallel
Strand 4	D	57	69	anti-parallel
Strand 5	D	37	52	anti-parallel
Strand 6	D	163	167	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	100	first strand
Strand 2	D	146	155	anti-parallel
Strand 3	D	207	218	anti-parallel
Strand 4	D	187	199	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	88	first strand
Strand 2	E	115	117	anti-parallel
Strand 3	E	122	133	anti-parallel
Strand 4	E	57	69	anti-parallel
Strand 5	E	37	52	anti-parallel
Strand 6	E	163	167	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	100	first strand
Strand 2	E	146	155	anti-parallel
Strand 3	E	207	218	anti-parallel
Strand 4	E	187	199	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FSP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FSP