Analysis of interatomic Contacts of Structural Units in PDB entry:
8FSS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FSS entry

There are 2 chains in PDB entry 8FSS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5PRO 579
B
 ARG 2ALA 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8FSS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
114 129Right-handed alpha
Helix 2
AA2
A
130 137Right-handed alpha
Helix 3
AA3
A
158 166Right-handed alpha
Helix 4
AA4
A
172 177Right-handed alpha
Helix 5
AA5
A
238 248Right-handed alpha
Helix 6
AA6
A
258 265Right-handed alpha
Helix 7
AA7
A
298 302Right-handed 310
Helix 8
AA8
A
303 313Right-handed alpha
Helix 9
AA9
A
315 323Right-handed alpha
Helix 10
AB1
A
347 355Right-handed alpha
Helix 11
AB2
A
356 362Right-handed 310
Helix 12
AB3
A
363 368Right-handed alpha
Helix 13
AB4
A
381 395Right-handed alpha
Helix 14
AB5
A
427 438Right-handed alpha
Helix 15
AB6
A
448 459Right-handed alpha
Helix 16
AB7
A
477 483Right-handed alpha
Helix 17
AB8
A
484 487Right-handed 310
Helix 18
AB9
A
498 510Right-handed alpha
Helix 19
AC1
A
514 532Right-handed alpha
Helix 20
AC2
A
564 568Right-handed 310
Helix 21
AC3
A
571 576Right-handed alpha
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There are 9 sheets in PDB entry 8FSS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
85 90anti-parallel
Strand 3
A
96 101anti-parallel
Strand 4
A
149 153anti-parallel
Strand 5
A
141 146anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
79 82anti-parallel
Strand 3
A
70 72anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 43first strand
Strand 2
A
230 236parallel
Strand 3
A
205 210anti-parallel
Strand 4
A
195 201anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 255first strand
Strand 2
A
545 549anti-parallel
Strand 3
A
276 280anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 468first strand
Strand 2
A
289 294anti-parallel
Strand 3
A
535 537anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 330first strand
Strand 2
A
539 540anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 400first strand
Strand 2
A
403 406anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 420first strand
Strand 2
A
441 447parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
552 553first strand
Strand 2
A
569 570anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il