Analysis of interatomic Contacts of Structural Units in PDB entry:
8FTD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FTD entry

There are 10 chains in PDB entry 8FTD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	VAL 5	ARG 235
H	SER 4	LEU 234
I	VAL 2	GLU 1342
J	GLU 16	ALA 1375
K	ALA 2	LEU 80
L	GLU 90	ASP 613
P	A -45	G 20
Q	C 20	T 85
R	ASP 250	PRO 322
Z	LEU 5	GLU 77

There are138 helices in PDB entry 8FTD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	34	50	Right-handed alpha
Helix 2	AA2	G	77	87	Right-handed alpha
Helix 3	AA3	G	154	159	Right-handed alpha
Helix 4	AA4	G	212	230	Right-handed alpha
Helix 5	AA5	H	34	50	Right-handed alpha
Helix 6	AA6	H	77	87	Right-handed alpha
Helix 7	AA7	H	214	229	Right-handed alpha
Helix 8	AA8	I	4	9	Right-handed alpha
Helix 9	AA9	I	28	39	Right-handed alpha
Helix 10	AB1	I	48	57	Right-handed alpha
Helix 11	AB2	I	81	89	Right-handed alpha
Helix 12	AB3	I	206	213	Right-handed alpha
Helix 13	AB4	I	216	225	Right-handed alpha
Helix 14	AB5	I	242	246	Right-handed 310
Helix 15	AB6	I	270	281	Right-handed alpha
Helix 16	AB7	I	288	292	Right-handed 310
Helix 17	AB8	I	318	327	Right-handed alpha
Helix 18	AB9	I	345	354	Right-handed alpha
Helix 19	AC1	I	358	371	Right-handed alpha
Helix 20	AC2	I	377	390	Right-handed alpha
Helix 21	AC3	I	398	409	Right-handed alpha
Helix 22	AC4	I	421	438	Right-handed alpha
Helix 23	AC5	I	447	449	Right-handed 310
Helix 24	AC6	I	455	481	Right-handed alpha
Helix 25	AC7	I	495	508	Right-handed alpha
Helix 26	AC8	I	519	527	Right-handed alpha
Helix 27	AC9	I	551	555	Right-handed 310
Helix 28	AD1	I	608	614	Right-handed alpha
Helix 29	AD2	I	648	650	Right-handed 310
Helix 30	AD3	I	664	668	Right-handed 310
Helix 31	AD4	I	670	674	Right-handed 310
Helix 32	AD5	I	675	687	Right-handed alpha
Helix 33	AD6	I	704	712	Right-handed alpha
Helix 34	AD7	I	738	741	Right-handed 310
Helix 35	AD8	I	820	825	Right-handed alpha
Helix 36	AD9	I	858	862	Right-handed 310
Helix 37	AE1	I	898	907	Right-handed alpha
Helix 38	AE2	I	942	982	Right-handed alpha
Helix 39	AE3	I	993	998	Right-handed alpha
Helix 40	AE4	I	1008	1038	Right-handed alpha
Helix 41	AE5	I	1081	1085	Right-handed 310
Helix 42	AE6	I	1099	1101	Right-handed 310
Helix 43	AE7	I	1102	1107	Right-handed alpha
Helix 44	AE8	I	1109	1135	Right-handed alpha
Helix 45	AE9	I	1138	1151	Right-handed alpha
Helix 46	AF1	I	1165	1176	Right-handed alpha
Helix 47	AF2	I	1191	1202	Right-handed alpha
Helix 48	AF3	I	1238	1242	Right-handed 310
Helix 49	AF4	I	1271	1281	Right-handed alpha
Helix 50	AF5	I	1283	1292	Right-handed alpha
Helix 51	AF6	I	1297	1311	Right-handed alpha
Helix 52	AF7	I	1320	1333	Right-handed alpha
Helix 53	AF8	J	26	33	Right-handed alpha
Helix 54	AF9	J	58	63	Right-handed alpha
Helix 55	AG1	J	77	81	Right-handed 310
Helix 56	AG2	J	94	100	Right-handed 310
Helix 57	AG3	J	113	119	Right-handed alpha
Helix 58	AG4	J	122	129	Right-handed alpha
Helix 59	AG5	J	131	140	Right-handed alpha
Helix 60	AG6	J	161	172	Right-handed alpha
Helix 61	AG7	J	181	192	Right-handed alpha
Helix 62	AG8	J	193	208	Right-handed alpha
Helix 63	AG9	J	210	230	Right-handed alpha
Helix 64	AH1	J	233	236	Right-handed 310
Helix 65	AH2	J	246	250	Right-handed 310
Helix 66	AH3	J	263	285	Right-handed alpha
Helix 67	AH4	J	288	308	Right-handed alpha
Helix 68	AH5	J	326	332	Right-handed alpha
Helix 69	AH6	J	336	341	Right-handed alpha
Helix 70	AH7	J	370	377	Right-handed alpha
Helix 71	AH8	J	377	388	Right-handed alpha
Helix 72	AH9	J	393	404	Right-handed alpha
Helix 73	AI1	J	407	416	Right-handed alpha
Helix 74	AI2	J	430	432	Right-handed 310
Helix 75	AI3	J	450	452	Right-handed 310
Helix 76	AI4	J	453	458	Right-handed alpha
Helix 77	AI5	J	473	483	Right-handed alpha
Helix 78	AI6	J	485	489	Right-handed 310
Helix 79	AI7	J	504	514	Right-handed alpha
Helix 80	AI8	J	529	539	Right-handed alpha
Helix 81	AI9	J	574	580	Right-handed alpha
Helix 82	AJ1	J	581	583	Right-handed 310
Helix 83	AJ2	J	588	593	Right-handed 310
Helix 84	AJ3	J	597	613	Right-handed alpha
Helix 85	AJ4	J	614	636	Right-handed alpha
Helix 86	AJ5	J	649	670	Right-handed alpha
Helix 87	AJ6	J	674	703	Right-handed alpha
Helix 88	AJ7	J	720	728	Right-handed alpha
Helix 89	AJ8	J	733	741	Right-handed alpha
Helix 90	AJ9	J	768	802	Right-handed alpha
Helix 91	AK1	J	834	840	Right-handed alpha
Helix 92	AK2	J	865	876	Right-handed alpha
Helix 93	AK3	J	884	888	Right-handed 310
Helix 94	AK4	J	896	900	Right-handed alpha
Helix 95	AK5	J	914	925	Right-handed alpha
Helix 96	AK6	J	926	930	Right-handed 310
Helix 97	AK7	J	1069	1074	Right-handed 310
Helix 98	AK8	J	1138	1147	Right-handed alpha
Helix 99	AK9	J	1216	1245	Right-handed alpha
Helix 100	AL1	J	1249	1261	Right-handed alpha
Helix 101	AL2	J	1282	1295	Right-handed alpha
Helix 102	AL3	J	1308	1315	Right-handed alpha
Helix 103	AL4	J	1318	1326	Right-handed alpha
Helix 104	AL5	J	1327	1339	Right-handed alpha
Helix 105	AL6	J	1347	1354	Right-handed alpha
Helix 106	AL7	J	1361	1373	Right-handed alpha
Helix 107	AL8	K	6	13	Right-handed alpha
Helix 108	AL9	K	17	32	Right-handed alpha
Helix 109	AM1	K	45	57	Right-handed alpha
Helix 110	AM2	K	60	77	Right-handed alpha
Helix 111	AM3	K	78	80	Right-handed 310
Helix 112	AM4	L	96	107	Right-handed alpha
Helix 113	AM5	L	112	136	Right-handed alpha
Helix 114	AM6	L	137	153	Right-handed alpha
Helix 115	AM7	L	215	233	Right-handed alpha
Helix 116	AM8	L	244	258	Right-handed alpha
Helix 117	AM9	L	262	292	Right-handed alpha
Helix 118	AN1	L	298	307	Right-handed alpha
Helix 119	AN2	L	330	352	Right-handed alpha
Helix 120	AN3	L	355	392	Right-handed alpha
Helix 121	AN4	L	393	395	Right-handed 310
Helix 122	AN5	L	400	417	Right-handed alpha
Helix 123	AN6	L	426	446	Right-handed alpha
Helix 124	AN7	L	453	475	Right-handed alpha
Helix 125	AN8	L	479	487	Right-handed alpha
Helix 126	AN9	L	492	500	Right-handed alpha
Helix 127	AO1	L	518	523	Right-handed 310
Helix 128	AO2	L	530	551	Right-handed alpha
Helix 129	AO3	L	552	563	Right-handed alpha
Helix 130	AO4	L	572	581	Right-handed alpha
Helix 131	AO5	L	583	600	Right-handed alpha
Helix 132	AO6	L	604	610	Right-handed alpha
Helix 133	AO7	R	256	261	Right-handed 310
Helix 134	AO8	R	263	274	Right-handed alpha
Helix 135	AO9	R	277	282	Right-handed alpha
Helix 136	AP1	R	285	292	Right-handed alpha
Helix 137	AP2	R	296	310	Right-handed alpha
Helix 138	AP3	Z	61	76	Right-handed alpha

There are 47 sheets in PDB entry 8FTD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	15	first strand
Strand 2	G	23	31	anti-parallel
Strand 3	G	199	207	anti-parallel
Strand 4	G	180	189	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	105	first strand
Strand 2	G	139	153	anti-parallel
Strand 3	G	52	61	anti-parallel
Strand 4	G	170	172	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	105	first strand
Strand 2	G	139	153	anti-parallel
Strand 3	G	175	177	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	92	first strand
Strand 2	G	121	123	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	109	111	first strand
Strand 2	G	129	132	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	27	first strand
Strand 2	H	199	207	anti-parallel
Strand 3	H	180	189	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	52	61	first strand
Strand 2	H	139	150	anti-parallel
Strand 3	H	97	105	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	90	92	first strand
Strand 2	H	121	123	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	109	111	first strand
Strand 2	H	129	132	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	152	153	first strand
Strand 2	H	175	176	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	13	14	first strand
Strand 2	I	1182	1183	parallel
Strand 3	I	700	701	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	59	60	first strand
Strand 2	I	66	75	anti-parallel
Strand 3	I	93	104	anti-parallel
Strand 4	I	116	128	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	136	137	first strand
Strand 2	I	142	145	anti-parallel
Strand 3	I	512	514	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	451	454	first strand
Strand 2	I	147	151	anti-parallel
Strand 3	I	530	531	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	154	158	first strand
Strand 2	I	173	177	anti-parallel
Strand 3	I	184	187	anti-parallel
Strand 4	I	195	198	anti-parallel
Strand 5	I	204	205	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	227	230	first strand
Strand 2	I	333	336	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	255	257	first strand
Strand 2	I	260	263	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	301	302	first strand
Strand 2	I	309	311	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	580	581	first strand
Strand 2	I	587	594	anti-parallel
Strand 3	I	599	607	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	580	581	first strand
Strand 2	I	587	594	anti-parallel
Strand 3	I	652	654	anti-parallel
Strand 4	I	616	617	parallel
Strand 5	I	633	637	anti-parallel
Strand 6	I	642	646	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	716	717	first strand
Strand 2	I	782	785	anti-parallel
Strand 3	I	768	769	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	748	752	first strand
Strand 2	I	731	736	anti-parallel
Strand 3	I	722	727	anti-parallel
Strand 4	I	776	777	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	757	758	first strand
Strand 2	I	764	765	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	789	790	first strand
Strand 2	I	793	794	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1209	1210	first strand
Strand 2	I	1225	1234	anti-parallel
Strand 3	I	1065	1067	anti-parallel
Strand 4	I	1073	1080	anti-parallel
Strand 5	I	816	819	parallel
Strand 6	I	1096	1098	anti-parallel
Strand 7	I	798	804	parallel
Strand 8	I	1225	1234	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	846	847	first strand
Strand 2	I	830	843	anti-parallel
Strand 3	I	1046	1058	anti-parallel
Strand 4	I	926	935	anti-parallel
Strand 5	I	876	877	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	882	884	first strand
Strand 2	I	918	919	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	887	889	first strand
Strand 2	I	913	915	anti-parallel

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There are 8 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1244	1246	first strand
Strand 2	J	350	356	anti-parallel
Strand 3	J	465	469	anti-parallel
Strand 4	J	421	424	anti-parallel
Strand 5	J	434	442	anti-parallel
Strand 6	J	365	369	parallel
Strand 7	J	446	448	anti-parallel
Strand 8	J	350	356	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1269	1270	first strand
Strand 2	J	345	346	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1335	1340	first strand
Strand 2	J	19	24	anti-parallel
Strand 3	J	1341	1343	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	34	37	first strand
Strand 2	J	102	112	parallel
Strand 3	J	238	244	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	159	160	first strand
Strand 2	J	144	147	anti-parallel
Strand 3	J	177	179	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	254	255	first strand
Strand 2	J	259	262	anti-parallel
Strand 3	L	505	506	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	526	527	first strand
Strand 2	J	547	556	parallel
Strand 3	J	564	573	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	706	707	first strand
Strand 2	J	714	715	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	809	811	first strand
Strand 2	J	894	895	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	820	821	first strand
Strand 2	J	881	882	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	949	951	first strand
Strand 2	J	1016	1019	anti-parallel
Strand 3	J	1002	1003	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	957	961	first strand
Strand 2	J	981	985	anti-parallel
Strand 3	J	991	996	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	965	967	first strand
Strand 2	J	973	975	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1024	1026	first strand
Strand 2	J	1122	1125	anti-parallel
Strand 3	J	1106	1107	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1034	1035	first strand
Strand 2	J	1077	1081	anti-parallel
Strand 3	J	1098	1100	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1046	1050	first strand
Strand 2	J	1057	1061	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1162	1165	first strand
Strand 2	J	1173	1178	anti-parallel
Strand 3	J	1189	1190	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1279	1281	first strand
Strand 2	J	1263	1268	anti-parallel
Strand 3	J	1301	1304	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	46	49	first strand
Strand 2	Z	52	55	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FTD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FTD