Analysis of interatomic Contacts of Structural Units in PDB entry:
8FTP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FTP entry

There are 2 chains in PDB entry 8FTP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4GLU 246
B
 LYS 4GLU 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 8FTP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 30Right-handed 310
Helix 2
AA2
A
31 41Right-handed alpha
Helix 3
AA3
A
57 62Right-handed alpha
Helix 4
AA4
A
64 82Right-handed alpha
Helix 5
AA5
A
93 104Right-handed alpha
Helix 6
AA6
A
124 141Right-handed alpha
Helix 7
AA7
A
144 154Right-handed alpha
Helix 8
AA8
A
157 175Right-handed alpha
Helix 9
AA9
A
176 178Right-handed 310
Helix 10
AB1
A
196 205Right-handed alpha
Helix 11
AB2
A
227 241Right-handed alpha
Helix 12
AB3
B
27 30Right-handed 310
Helix 13
AB4
B
31 41Right-handed alpha
Helix 14
AB5
B
57 62Right-handed alpha
Helix 15
AB6
B
64 82Right-handed alpha
Helix 16
AB7
B
93 104Right-handed alpha
Helix 17
AB8
B
124 141Right-handed alpha
Helix 18
AB9
B
144 154Right-handed alpha
Helix 19
AC1
B
157 175Right-handed alpha
Helix 20
AC2
B
176 178Right-handed 310
Helix 21
AC3
B
196 205Right-handed alpha
Helix 22
AC4
B
221 225Right-handed 310
Helix 23
AC5
B
227 241Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8FTP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
44 47anti-parallel
Strand 3
A
17 21parallel
Strand 4
A
87 92parallel
Strand 5
A
110 114parallel
Strand 6
A
182 187parallel
Strand 7
A
210 215parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 11first strand
Strand 2
B
44 47anti-parallel
Strand 3
B
17 21parallel
Strand 4
B
87 92parallel
Strand 5
B
110 114parallel
Strand 6
B
182 187parallel
Strand 7
B
210 215parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il