Analysis of interatomic Contacts of Structural Units in PDB entry:
8FUD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FUD entry

There are 4 chains in PDB entry 8FUD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 186
B
 MET 1SER 186
C
 ASP 73GLY 79
D
 ASP 72GLY 79
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8FUD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 30Right-handed alpha
Helix 2
AA2
A
46 57Right-handed alpha
Helix 3
AA3
A
99 111Right-handed alpha
Helix 4
AA4
B
23 30Right-handed alpha
Helix 5
AA5
B
46 57Right-handed alpha
Helix 6
AA6
B
99 111Right-handed alpha
Helix 7
AA7
C
75 79Right-handed 310
Helix 8
AA8
D
75 79Right-handed 310
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There are 4 sheets in PDB entry 8FUD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
37 40parallel
Strand 3
A
5 10parallel
Strand 4
A
153 160anti-parallel
Strand 5
A
163 172anti-parallel
Strand 6
A
175 184anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 81first strand
Strand 2
A
84 89anti-parallel
Strand 3
A
114 117parallel
Strand 4
A
131 135parallel
Strand 5
A
124 128anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
37 40parallel
Strand 3
B
5 10parallel
Strand 4
B
153 160anti-parallel
Strand 5
B
163 172anti-parallel
Strand 6
B
175 184anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 81first strand
Strand 2
B
84 89anti-parallel
Strand 3
B
114 117parallel
Strand 4
B
131 135parallel
Strand 5
B
124 128anti-parallel
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