Analysis of interatomic Contacts of Structural Units in PDB entry:
8FUK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FUK entry

There are 11 chains in PDB entry 8FUK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	C 1	G 60
A	LYS 2	GLN 348
B	LYS 2	LYS 350
C	LYS 2	HIS 349
D	LYS 2	HIS 349
E	LYS 2	HIS 349
F	LYS 2	HIS 349
G	VAL 97	ASN 631
H	LYS 2	LEU 198
I	ALA 196	VAL 391
J	GLN 4	SER 139

There are103 helices in PDB entry 8FUK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	49	Right-handed 310
Helix 2	AA2	A	62	66	Right-handed 310
Helix 3	AA3	A	105	123	Right-handed alpha
Helix 4	AA4	A	125	138	Right-handed alpha
Helix 5	AA5	A	139	146	Right-handed 310
Helix 6	AA6	A	177	183	Right-handed alpha
Helix 7	AA7	A	186	200	Right-handed alpha
Helix 8	AA8	A	260	268	Right-handed alpha
Helix 9	AA9	A	305	311	Right-handed alpha
Helix 10	AB1	A	312	320	Right-handed alpha
Helix 11	AB2	A	328	344	Right-handed alpha
Helix 12	AB3	B	45	50	Right-handed alpha
Helix 13	AB4	B	62	66	Right-handed 310
Helix 14	AB5	B	105	123	Right-handed alpha
Helix 15	AB6	B	125	138	Right-handed alpha
Helix 16	AB7	B	139	146	Right-handed 310
Helix 17	AB8	B	177	183	Right-handed alpha
Helix 18	AB9	B	186	199	Right-handed alpha
Helix 19	AC1	B	260	269	Right-handed alpha
Helix 20	AC2	B	291	294	Right-handed 310
Helix 21	AC3	B	299	303	Right-handed 310
Helix 22	AC4	B	305	311	Right-handed alpha
Helix 23	AC5	B	312	323	Right-handed alpha
Helix 24	AC6	B	327	344	Right-handed alpha
Helix 25	AC7	C	45	50	Right-handed alpha
Helix 26	AC8	C	51	55	Right-handed 310
Helix 27	AC9	C	63	66	Right-handed 310
Helix 28	AD1	C	105	123	Right-handed alpha
Helix 29	AD2	C	125	138	Right-handed alpha
Helix 30	AD3	C	139	147	Right-handed 310
Helix 31	AD4	C	177	183	Right-handed alpha
Helix 32	AD5	C	186	200	Right-handed alpha
Helix 33	AD6	C	260	269	Right-handed alpha
Helix 34	AD7	C	291	294	Right-handed 310
Helix 35	AD8	C	299	303	Right-handed 310
Helix 36	AD9	C	305	311	Right-handed alpha
Helix 37	AE1	C	312	317	Right-handed alpha
Helix 38	AE2	C	328	344	Right-handed alpha
Helix 39	AE3	D	45	49	Right-handed 310
Helix 40	AE4	D	61	66	Right-handed alpha
Helix 41	AE5	D	105	123	Right-handed alpha
Helix 42	AE6	D	125	138	Right-handed alpha
Helix 43	AE7	D	139	146	Right-handed 310
Helix 44	AE8	D	177	183	Right-handed alpha
Helix 45	AE9	D	186	199	Right-handed alpha
Helix 46	AF1	D	261	269	Right-handed alpha
Helix 47	AF2	D	299	303	Right-handed 310
Helix 48	AF3	D	305	311	Right-handed alpha
Helix 49	AF4	D	312	321	Right-handed alpha
Helix 50	AF5	D	327	344	Right-handed alpha
Helix 51	AF6	E	45	51	Right-handed alpha
Helix 52	AF7	E	61	67	Right-handed alpha
Helix 53	AF8	E	105	123	Right-handed alpha
Helix 54	AF9	E	125	138	Right-handed alpha
Helix 55	AG1	E	139	146	Right-handed 310
Helix 56	AG2	E	170	175	Right-handed alpha
Helix 57	AG3	E	177	183	Right-handed alpha
Helix 58	AG4	E	186	200	Right-handed alpha
Helix 59	AG5	E	260	269	Right-handed alpha
Helix 60	AG6	E	305	311	Right-handed alpha
Helix 61	AG7	E	312	322	Right-handed alpha
Helix 62	AG8	E	327	343	Right-handed alpha
Helix 63	AG9	F	105	123	Right-handed alpha
Helix 64	AH1	F	125	138	Right-handed alpha
Helix 65	AH2	F	139	147	Right-handed 310
Helix 66	AH3	F	177	183	Right-handed alpha
Helix 67	AH4	F	186	200	Right-handed alpha
Helix 68	AH5	F	260	269	Right-handed alpha
Helix 69	AH6	F	299	303	Right-handed 310
Helix 70	AH7	F	305	311	Right-handed alpha
Helix 71	AH8	F	312	323	Right-handed alpha
Helix 72	AH9	F	329	344	Right-handed alpha
Helix 73	AI1	G	112	116	Right-handed 310
Helix 74	AI2	G	218	230	Right-handed alpha
Helix 75	AI3	G	232	234	Right-handed 310
Helix 76	AI4	G	411	428	Right-handed alpha
Helix 77	AI5	G	492	499	Right-handed alpha
Helix 78	AI6	G	513	519	Right-handed 310
Helix 79	AI7	G	524	530	Right-handed alpha
Helix 80	AI8	G	549	561	Right-handed alpha
Helix 81	AI9	G	608	612	Right-handed 310
Helix 82	AJ1	H	16	35	Right-handed alpha
Helix 83	AJ2	H	62	70	Right-handed alpha
Helix 84	AJ3	H	72	80	Right-handed alpha
Helix 85	AJ4	H	105	111	Right-handed alpha
Helix 86	AJ5	H	111	126	Right-handed alpha
Helix 87	AJ6	I	198	206	Right-handed alpha
Helix 88	AJ7	I	216	230	Right-handed alpha
Helix 89	AJ8	I	238	245	Right-handed alpha
Helix 90	AJ9	I	246	265	Right-handed alpha
Helix 91	AK1	I	274	279	Right-handed alpha
Helix 92	AK2	I	279	288	Right-handed alpha
Helix 93	AK3	I	297	310	Right-handed alpha
Helix 94	AK4	I	317	320	Right-handed 310
Helix 95	AK5	I	324	333	Right-handed alpha
Helix 96	AK6	I	335	345	Right-handed alpha
Helix 97	AK7	I	369	380	Right-handed alpha
Helix 98	AK8	I	386	390	Right-handed 310
Helix 99	AK9	J	13	26	Right-handed alpha
Helix 100	AL1	J	32	45	Right-handed alpha
Helix 101	AL2	J	60	64	Right-handed 310
Helix 102	AL3	J	67	81	Right-handed alpha
Helix 103	AL4	J	134	139	Right-handed alpha

There are 43 sheets in PDB entry 8FUK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	8	first strand
Strand 2	A	102	103	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	15	first strand
Strand 2	A	84	93	anti-parallel
Strand 3	A	19	23	anti-parallel
Strand 4	A	29	31	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	15	first strand
Strand 2	A	84	93	anti-parallel
Strand 3	A	205	213	anti-parallel
Strand 4	A	152	158	anti-parallel
Strand 5	A	166	168	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	42	first strand
Strand 2	A	68	75	anti-parallel
Strand 3	A	242	244	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	251	first strand
Strand 2	A	254	257	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	290	first strand
Strand 2	A	295	297	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	9	first strand
Strand 2	B	345	346	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	19	23	anti-parallel
Strand 3	B	84	92	anti-parallel
Strand 4	B	206	213	anti-parallel
Strand 5	B	152	157	anti-parallel
Strand 6	B	167	168	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	70	72	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	251	first strand
Strand 2	B	254	257	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	290	first strand
Strand 2	B	295	296	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	C	7	9	anti-parallel
Strand 3	C	345	346	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	84	94	anti-parallel
Strand 3	C	18	23	anti-parallel
Strand 4	C	204	214	first strand
Strand 5	C	151	159	anti-parallel
Strand 6	C	166	168	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	18	23	anti-parallel
Strand 3	C	84	94	anti-parallel
Strand 4	C	254	259	first strand
Strand 5	C	248	251	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	42	first strand
Strand 2	C	68	75	anti-parallel
Strand 3	C	242	244	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	272	first strand
Strand 2	C	282	283	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	289	290	first strand
Strand 2	C	295	296	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	103	first strand
Strand 2	D	7	9	anti-parallel
Strand 3	D	345	346	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	14	first strand
Strand 2	D	84	93	anti-parallel
Strand 3	D	19	23	anti-parallel
Strand 4	D	29	31	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	14	first strand
Strand 2	D	84	93	anti-parallel
Strand 3	D	205	213	anti-parallel
Strand 4	D	152	159	anti-parallel
Strand 5	D	166	168	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	40	first strand
Strand 2	D	70	75	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	251	first strand
Strand 2	D	254	257	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	272	first strand
Strand 2	D	282	283	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	289	290	first strand
Strand 2	D	295	296	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	8	first strand
Strand 2	E	102	103	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	14	first strand
Strand 2	E	84	94	anti-parallel
Strand 3	E	18	23	anti-parallel
Strand 4	E	204	213	first strand
Strand 5	E	152	159	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	31	first strand
Strand 2	E	18	23	anti-parallel
Strand 3	E	84	94	anti-parallel
Strand 4	E	254	259	first strand
Strand 5	E	248	251	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	42	first strand
Strand 2	E	68	75	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	102	103	first strand
Strand 2	F	7	9	anti-parallel
Strand 3	F	345	346	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	31	first strand
Strand 2	F	18	23	anti-parallel
Strand 3	F	84	94	anti-parallel
Strand 4	F	204	213	anti-parallel
Strand 5	F	152	156	anti-parallel
Strand 6	F	166	168	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	31	first strand
Strand 2	F	18	23	anti-parallel
Strand 3	F	254	259	anti-parallel
Strand 4	F	248	251	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	72	75	first strand
Strand 2	F	35	40	anti-parallel
Strand 3	H	143	147	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	288	289	first strand
Strand 2	F	296	297	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	201	203	first strand
Strand 2	G	211	215	anti-parallel
Strand 3	G	588	595	parallel
Strand 4	G	567	572	anti-parallel
Strand 5	G	622	627	anti-parallel
Strand 6	G	614	616	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	236	240	first strand
Strand 2	G	257	261	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	508	511	first strand
Strand 2	G	387	396	anti-parallel
Strand 3	G	521	522	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	508	511	first strand
Strand 2	G	387	396	anti-parallel
Strand 3	G	478	485	anti-parallel
Strand 4	G	435	444	anti-parallel
Strand 5	G	538	542	anti-parallel
Strand 6	G	598	601	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	398	399	first strand
Strand 2	G	471	475	anti-parallel
Strand 3	G	447	451	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	41	43	first strand
Strand 2	H	55	60	anti-parallel
Strand 3	H	4	10	anti-parallel
Strand 4	H	84	86	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	41	43	first strand
Strand 2	H	55	60	anti-parallel
Strand 3	H	4	10	anti-parallel
Strand 4	H	90	91	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	167	171	first strand
Strand 2	H	98	103	anti-parallel
Strand 3	H	196	197	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	322	323	first strand
Strand 2	I	367	368	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	95	96	first strand
Strand 2	J	108	110	anti-parallel
Strand 3	J	113	115	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FUK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FUK