Analysis of interatomic Contacts of Structural Units in PDB entry:
8FUN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FUN entry

There are 4 chains in PDB entry 8FUN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 29VAL 378
B
 THR 11ASN 375
C
 GLY 28VAL 378
D
 GLU 5THR 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 8FUN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 51Right-handed 310
Helix 2
AA2
A
52 62Right-handed alpha
Helix 3
AA3
A
95 104Right-handed alpha
Helix 4
AA4
A
119 123Right-handed 310
Helix 5
AA5
A
125 144Right-handed alpha
Helix 6
AA6
A
145 148Right-handed 310
Helix 7
AA7
A
161 173Right-handed alpha
Helix 8
AA8
A
193 195Right-handed 310
Helix 9
AA9
A
196 206Right-handed alpha
Helix 10
AB1
A
230 253Right-handed alpha
Helix 11
AB2
A
253 258Right-handed alpha
Helix 12
AB3
A
272 287Right-handed alpha
Helix 13
AB4
A
288 291Right-handed 310
Helix 14
AB5
A
297 305Right-handed alpha
Helix 15
AB6
A
320 330Right-handed alpha
Helix 16
AB7
A
350 356Right-handed 310
Helix 17
AB8
A
358 367Right-handed alpha
Helix 18
AB9
A
367 375Right-handed alpha
Helix 19
AC1
B
35 39Right-handed 310
Helix 20
AC2
B
40 51Right-handed alpha
Helix 21
AC3
B
67 72Right-handed 310
Helix 22
AC4
B
86 94Right-handed alpha
Helix 23
AC5
B
94 99Right-handed alpha
Helix 24
AC6
B
117 121Right-handed 310
Helix 25
AC7
B
123 142Right-handed alpha
Helix 26
AC8
B
159 171Right-handed alpha
Helix 27
AC9
B
191 193Right-handed 310
Helix 28
AD1
B
194 204Right-handed alpha
Helix 29
AD2
B
228 235Right-handed alpha
Helix 30
AD3
B
235 250Right-handed alpha
Helix 31
AD4
B
251 256Right-handed alpha
Helix 32
AD5
B
270 286Right-handed alpha
Helix 33
AD6
B
287 289Right-handed 310
Helix 34
AD7
B
295 298Right-handed 310
Helix 35
AD8
B
299 303Right-handed alpha
Helix 36
AD9
B
318 328Right-handed alpha
Helix 37
AE1
B
355 364Right-handed alpha
Helix 38
AE2
B
364 372Right-handed alpha
Helix 39
AE3
C
43 51Right-handed 310
Helix 40
AE4
C
52 62Right-handed alpha
Helix 41
AE5
C
95 104Right-handed alpha
Helix 42
AE6
C
119 123Right-handed 310
Helix 43
AE7
C
125 144Right-handed alpha
Helix 44
AE8
C
145 148Right-handed 310
Helix 45
AE9
C
161 173Right-handed alpha
Helix 46
AF1
C
193 195Right-handed 310
Helix 47
AF2
C
196 206Right-handed alpha
Helix 48
AF3
C
230 252Right-handed alpha
Helix 49
AF4
C
253 258Right-handed alpha
Helix 50
AF5
C
272 288Right-handed alpha
Helix 51
AF6
C
289 291Right-handed 310
Helix 52
AF7
C
297 305Right-handed alpha
Helix 53
AF8
C
320 330Right-handed alpha
Helix 54
AF9
C
350 356Right-handed 310
Helix 55
AG1
C
358 367Right-handed alpha
Helix 56
AG2
C
367 375Right-handed alpha
Helix 57
AG3
D
35 39Right-handed 310
Helix 58
AG4
D
40 51Right-handed alpha
Helix 59
AG5
D
68 72Right-handed 310
Helix 60
AG6
D
86 94Right-handed alpha
Helix 61
AG7
D
117 121Right-handed 310
Helix 62
AG8
D
123 142Right-handed alpha
Helix 63
AG9
D
159 171Right-handed alpha
Helix 64
AH1
D
191 193Right-handed 310
Helix 65
AH2
D
194 204Right-handed alpha
Helix 66
AH3
D
228 235Right-handed alpha
Helix 67
AH4
D
235 250Right-handed alpha
Helix 68
AH5
D
251 256Right-handed alpha
Helix 69
AH6
D
270 286Right-handed alpha
Helix 70
AH7
D
287 289Right-handed 310
Helix 71
AH8
D
295 298Right-handed 310
Helix 72
AH9
D
299 303Right-handed alpha
Helix 73
AI1
D
317 329Right-handed alpha
Helix 74
AI2
D
355 364Right-handed alpha
Helix 75
AI3
D
364 371Right-handed alpha
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There are 4 sheets in PDB entry 8FUN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 39first strand
Strand 2
A
111 116parallel
Strand 3
A
151 156parallel
Strand 4
A
178 186parallel
Strand 5
A
210 216parallel
Strand 6
A
263 266parallel
Strand 7
A
306 309parallel
Strand 8
A
335 336parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 26first strand
Strand 2
B
100 105parallel
Strand 3
B
149 154parallel
Strand 4
B
176 182parallel
Strand 5
B
208 211parallel
Strand 6
B
261 264parallel
Strand 7
B
304 307parallel
Strand 8
B
332 333parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 38first strand
Strand 2
C
111 115parallel
Strand 3
C
151 156parallel
Strand 4
C
178 186parallel
Strand 5
C
210 216parallel
Strand 6
C
263 266parallel
Strand 7
C
306 309parallel
Strand 8
C
335 336parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
21 26first strand
Strand 2
D
100 105parallel
Strand 3
D
149 154parallel
Strand 4
D
176 182parallel
Strand 5
D
208 211parallel
Strand 6
D
261 264parallel
Strand 7
D
304 307parallel
Strand 8
D
332 333parallel
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