Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 8FUQ entry
There are 6 chains in PDB entry 8FUQ
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
A
|
GLU 87 | PRO 137 |
B
|
GLU 87 | PRO 137 |
C
|
GLY 86 | ASN 135 |
D
|
PRO 89 | ASN 135 |
E
|
ASP 88 | PRO 136 |
F
|
ASP 88 | PRO 134 |
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There are 13
helices in PDB entry 8FUQ. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
| Helix 1 |
AA1 | A
| 88 |
110 | Right-handed alpha |
| Helix 2 |
AA2 | A
| 113 |
133 | Right-handed alpha |
| Helix 3 |
AA3 | B
| 88 |
110 | Right-handed alpha |
| Helix 4 |
AA4 | B
| 113 |
133 | Right-handed alpha |
| Helix 5 |
AA5 | C
| 88 |
110 | Right-handed alpha |
| Helix 6 |
AA6 | C
| 113 |
133 | Right-handed alpha |
| Helix 7 |
AA7 | D
| 90 |
109 | Right-handed alpha |
| Helix 8 |
AA8 | D
| 113 |
133 | Right-handed alpha |
| Helix 9 |
AA9 | E
| 89 |
108 | Right-handed alpha |
| Helix 10 |
AB1 | E
| 109 |
111 | Right-handed 310 |
| Helix 11 |
AB2 | E
| 113 |
133 | Right-handed alpha |
| Helix 12 |
AB3 | F
| 89 |
110 | Right-handed alpha |
| Helix 13 |
AB4 | F
| 113 |
133 | Right-handed alpha |
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There are no sheets in PDB entry
8FUQ
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il