Analysis of interatomic Contacts of Structural Units in PDB entry:
8FVI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FVI entry

There are 8 chains in PDB entry 8FVI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
0
 ASP 7ASP 157
1
 ASN 3ASP 173
A
 LEU 3SER 182
B
 A 2 U 11
C
 A 1 A 9
x
 SER 12ILE 151
y
 MET 1PRO 96
z
 MET 17ASP 111
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8FVI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
0
7 15Right-handed alpha
Helix 2
AA2
0
15 22Right-handed alpha
Helix 3
AA3
0
36 50Right-handed alpha
Helix 4
AA4
0
72 74Right-handed 310
Helix 5
AA5
0
128 135Right-handed alpha
Helix 6
AA6
0
137 149Right-handed alpha
Helix 7
AA7
1
14 30Right-handed alpha
Helix 8
AA8
1
99 109Right-handed alpha
Helix 9
AA9
1
116 118Right-handed 310
Helix 10
AB1
1
119 126Right-handed alpha
Helix 11
AB2
1
135 139Right-handed 310
Helix 12
AB3
1
145 155Right-handed alpha
Helix 13
AB4
1
166 171Right-handed alpha
Helix 14
AB5
A
5 13Right-handed alpha
Helix 15
AB6
A
54 67Right-handed alpha
Helix 16
AB7
A
85 99Right-handed alpha
Helix 17
AB8
A
116 129Right-handed alpha
Helix 18
AB9
A
137 148Right-handed alpha
Helix 19
AC1
A
158 170Right-handed alpha
Helix 20
AC2
A
171 181Right-handed alpha
Helix 21
AC3
x
18 30Right-handed alpha
Helix 22
AC4
x
31 33Right-handed 310
Helix 23
AC5
x
36 54Right-handed alpha
Helix 24
AC6
x
56 82Right-handed alpha
Helix 25
AC7
x
85 107Right-handed alpha
Helix 26
AC8
x
111 118Right-handed alpha
Helix 27
AC9
x
134 147Right-handed alpha
Helix 28
AD1
y
23 28Right-handed alpha
Helix 29
AD2
y
31 36Right-handed 310
Helix 30
AD3
y
56 61Right-handed alpha
Helix 31
AD4
y
63 67Right-handed 310
Helix 32
AD5
z
32 37Right-handed alpha
Helix 33
AD6
z
39 47Right-handed alpha
Helix 34
AD7
z
66 84Right-handed alpha
Helix 35
AD8
z
96 111Right-handed alpha
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There are 5 sheets in PDB entry 8FVI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
0
99 103first strand
Strand 2
0
106 113anti-parallel
Strand 3
0
120 127anti-parallel
Strand 4
0
25 30anti-parallel
Strand 5
0
55 57anti-parallel
Strand 6
0
64 70anti-parallel
Strand 7
1
5 11anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
51 59first strand
Strand 2
1
62 69anti-parallel
Strand 3
1
84 91anti-parallel
Strand 4
1
94 97anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 48first strand
Strand 2
A
29 36anti-parallel
Strand 3
A
74 80anti-parallel
Strand 4
A
102 108parallel
Strand 5
A
133 135parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
y
12 18first strand
Strand 2
y
3 9anti-parallel
Strand 3
y
73 74parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
z
28 31first strand
Strand 2
z
19 22anti-parallel
Strand 3
z
60 61parallel
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