Analysis of interatomic Contacts of Structural Units in PDB entry:
8FVJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FVJ entry

There are 10 chains in PDB entry 8FVJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
0	ASP 7	ASP 157
1	ASN 3	ASP 173
3	MET 1	PRO 96
4	MET 17	ASP 111
2	SER 12	ILE 319
5	ASP 7	ASP 157
6	ASN 3	ASP 173
8	MET 1	PRO 96
9	MET 17	ASP 111
7	SER 12	ILE 319

There are 65 helices in PDB entry 8FVJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	0	7	15	Right-handed alpha
Helix 2	AA2	0	15	22	Right-handed alpha
Helix 3	AA3	0	36	49	Right-handed alpha
Helix 4	AA4	0	128	135	Right-handed alpha
Helix 5	AA5	0	136	149	Right-handed alpha
Helix 6	AA6	1	14	31	Right-handed alpha
Helix 7	AA7	1	99	109	Right-handed alpha
Helix 8	AA8	1	116	119	Right-handed 310
Helix 9	AA9	1	120	125	Right-handed alpha
Helix 10	AB1	1	135	139	Right-handed 310
Helix 11	AB2	1	145	155	Right-handed alpha
Helix 12	AB3	1	167	172	Right-handed alpha
Helix 13	AB4	3	23	30	Right-handed alpha
Helix 14	AB5	3	32	36	Right-handed 310
Helix 15	AB6	3	56	61	Right-handed alpha
Helix 16	AB7	4	32	37	Right-handed alpha
Helix 17	AB8	4	39	47	Right-handed alpha
Helix 18	AB9	4	66	83	Right-handed alpha
Helix 19	AC1	4	99	110	Right-handed alpha
Helix 20	AC2	2	14	31	Right-handed alpha
Helix 21	AC3	2	36	54	Right-handed alpha
Helix 22	AC4	2	56	83	Right-handed alpha
Helix 23	AC5	2	85	107	Right-handed alpha
Helix 24	AC6	2	111	118	Right-handed alpha
Helix 25	AC7	2	134	169	Right-handed alpha
Helix 26	AC8	2	173	187	Right-handed alpha
Helix 27	AC9	2	195	225	Right-handed alpha
Helix 28	AD1	2	227	248	Right-handed alpha
Helix 29	AD2	2	257	270	Right-handed alpha
Helix 30	AD3	2	273	288	Right-handed alpha
Helix 31	AD4	2	289	300	Right-handed alpha
Helix 32	AD5	2	306	319	Right-handed alpha
Helix 33	AD6	5	8	15	Right-handed alpha
Helix 34	AD7	5	15	22	Right-handed alpha
Helix 35	AD8	5	36	49	Right-handed alpha
Helix 36	AD9	5	128	135	Right-handed alpha
Helix 37	AE1	5	136	149	Right-handed alpha
Helix 38	AE2	6	14	31	Right-handed alpha
Helix 39	AE3	6	99	109	Right-handed alpha
Helix 40	AE4	6	116	119	Right-handed 310
Helix 41	AE5	6	120	125	Right-handed alpha
Helix 42	AE6	6	135	139	Right-handed 310
Helix 43	AE7	6	145	155	Right-handed alpha
Helix 44	AE8	6	167	172	Right-handed alpha
Helix 45	AE9	8	23	30	Right-handed alpha
Helix 46	AF1	8	32	36	Right-handed 310
Helix 47	AF2	8	56	61	Right-handed alpha
Helix 48	AF3	9	32	37	Right-handed alpha
Helix 49	AF4	9	39	47	Right-handed alpha
Helix 50	AF5	9	66	83	Right-handed alpha
Helix 51	AF6	9	99	110	Right-handed alpha
Helix 52	AF7	7	14	31	Right-handed alpha
Helix 53	AF8	7	36	54	Right-handed alpha
Helix 54	AF9	7	56	83	Right-handed alpha
Helix 55	AG1	7	85	107	Right-handed alpha
Helix 56	AG2	7	111	118	Right-handed alpha
Helix 57	AG3	7	134	169	Right-handed alpha
Helix 58	AG4	7	173	187	Right-handed alpha
Helix 59	AG5	7	195	201	Right-handed alpha
Helix 60	AG6	7	201	225	Right-handed alpha
Helix 61	AG7	7	227	248	Right-handed alpha
Helix 62	AG8	7	257	270	Right-handed alpha
Helix 63	AG9	7	273	286	Right-handed alpha
Helix 64	AH1	7	289	300	Right-handed alpha
Helix 65	AH2	7	306	319	Right-handed alpha

There are 12 sheets in PDB entry 8FVJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Initial residue	Terminal residue	Strand sense
Strand 1	25	27	first strand
Strand 2	120	123	anti-parallel
Strand 3	114	115	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	0	55	57	first strand
Strand 2	0	64	69	anti-parallel
Strand 3	1	10	13	anti-parallel
Strand 4	1	83	90	anti-parallel
Strand 5	1	63	69	anti-parallel
Strand 6	1	51	57	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	6	7	first strand
Strand 2	0	64	69	anti-parallel
Strand 3	1	10	13	anti-parallel
Strand 4	1	83	90	anti-parallel
Strand 5	1	95	97	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Initial residue	Terminal residue	Strand sense
Strand 1	98	103	first strand
Strand 2	106	111	anti-parallel
Strand 3	125	127	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	43	44	first strand
Strand 2	3	77	78	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	21	22	first strand
Strand 2	4	60	61	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	25	27	first strand
Strand 2	5	120	123	anti-parallel
Strand 3	5	114	115	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	55	57	first strand
Strand 2	5	64	69	anti-parallel
Strand 3	6	10	13	anti-parallel
Strand 4	6	83	90	anti-parallel
Strand 5	6	63	69	anti-parallel
Strand 6	6	51	57	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	6	7	first strand
Strand 2	5	64	69	anti-parallel
Strand 3	6	10	13	anti-parallel
Strand 4	6	83	90	anti-parallel
Strand 5	6	95	97	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	98	103	first strand
Strand 2	5	106	111	anti-parallel
Strand 3	5	125	127	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	8	9	10	first strand
Strand 2	8	77	79	parallel
Strand 3	8	43	44	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	21	22	first strand
Strand 2	9	60	61	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FVJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FVJ