Analysis of interatomic Contacts of Structural Units in PDB entry:
8FVU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FVU entry

There are 3 chains in PDB entry 8FVU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 1403
B
 SER 94ALA 1024
U
 ASP -8ARG 70
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are122 helices in PDB entry 8FVU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 28Right-handed alpha
Helix 2
AA2
A
30 47Right-handed alpha
Helix 3
AA3
A
54 58Right-handed 310
Helix 4
AA4
A
59 66Right-handed alpha
Helix 5
AA5
A
67 70Right-handed 310
Helix 6
AA6
A
77 83Right-handed alpha
Helix 7
AA7
A
112 118Right-handed alpha
Helix 8
AA8
A
151 156Right-handed alpha
Helix 9
AA9
A
158 164Right-handed alpha
Helix 10
AB1
A
170 174Right-handed 310
Helix 11
AB2
A
177 184Right-handed alpha
Helix 12
AB3
A
212 220Right-handed alpha
Helix 13
AB4
A
224 231Right-handed alpha
Helix 14
AB5
A
232 242Right-handed alpha
Helix 15
AB6
A
250 254Right-handed 310
Helix 16
AB7
A
273 276Right-handed 310
Helix 17
AB8
A
277 283Right-handed alpha
Helix 18
AB9
A
295 301Right-handed alpha
Helix 19
AC1
A
330 339Right-handed alpha
Helix 20
AC2
A
342 351Right-handed alpha
Helix 21
AC3
A
395 413Right-handed alpha
Helix 22
AC4
A
420 424Right-handed 310
Helix 23
AC5
A
430 434Right-handed 310
Helix 24
AC6
A
454 462Right-handed 310
Helix 25
AC7
A
475 490Right-handed alpha
Helix 26
AC8
A
515 523Right-handed alpha
Helix 27
AC9
A
531 543Right-handed alpha
Helix 28
AD1
A
560 569Right-handed alpha
Helix 29
AD2
A
589 593Right-handed 310
Helix 30
AD3
A
603 615Right-handed alpha
Helix 31
AD4
A
618 632Right-handed alpha
Helix 32
AD5
A
633 638Right-handed 310
Helix 33
AD6
A
641 653Right-handed alpha
Helix 34
AD7
A
664 674Right-handed alpha
Helix 35
AD8
A
675 677Right-handed 310
Helix 36
AD9
A
684 700Right-handed alpha
Helix 37
AE1
A
708 714Right-handed alpha
Helix 38
AE2
A
722 726Right-handed 310
Helix 39
AE3
A
745 762Right-handed alpha
Helix 40
AE4
A
764 767Right-handed 310
Helix 41
AE5
A
768 776Right-handed alpha
Helix 42
AE6
A
788 796Right-handed alpha
Helix 43
AE7
A
802 815Right-handed alpha
Helix 44
AE8
A
817 822Right-handed alpha
Helix 45
AE9
A
834 851Right-handed alpha
Helix 46
AF1
A
851 874Right-handed alpha
Helix 47
AF2
A
876 879Right-handed 310
Helix 48
AF3
A
880 889Right-handed alpha
Helix 49
AF4
A
896 900Right-handed 310
Helix 50
AF5
A
901 906Right-handed alpha
Helix 51
AF6
A
907 913Right-handed 310
Helix 52
AF7
A
950 954Right-handed 310
Helix 53
AF8
A
956 976Right-handed alpha
Helix 54
AF9
A
1013 1025Right-handed alpha
Helix 55
AG1
A
1039 1043Right-handed 310
Helix 56
AG2
A
1044 1049Right-handed alpha
Helix 57
AG3
A
1051 1053Right-handed 310
Helix 58
AG4
A
1066 1074Right-handed alpha
Helix 59
AG5
A
1144 1153Right-handed alpha
Helix 60
AG6
A
1169 1177Right-handed alpha
Helix 61
AG7
A
1178 1180Right-handed 310
Helix 62
AG8
A
1195 1202Right-handed alpha
Helix 63
AG9
A
1203 1205Right-handed 310
Helix 64
AH1
A
1220 1231Right-handed alpha
Helix 65
AH2
A
1245 1251Right-handed alpha
Helix 66
AH3
A
1251 1258Right-handed alpha
Helix 67
AH4
A
1259 1261Right-handed 310
Helix 68
AH5
A
1279 1289Right-handed alpha
Helix 69
AH6
A
1307 1315Right-handed alpha
Helix 70
AH7
A
1331 1335Right-handed 310
Helix 71
AH8
A
1339 1351Right-handed alpha
Helix 72
AH9
A
1370 1378Right-handed alpha
Helix 73
AI1
A
1379 1381Right-handed 310
Helix 74
AI2
B
95 109Right-handed alpha
Helix 75
AI3
B
110 114Right-handed 310
Helix 76
AI4
B
176 189Right-handed alpha
Helix 77
AI5
B
191 195Right-handed 310
Helix 78
AI6
B
206 208Right-handed 310
Helix 79
AI7
B
211 220Right-handed alpha
Helix 80
AI8
B
231 237Right-handed alpha
Helix 81
AI9
B
238 241Right-handed 310
Helix 82
AJ1
B
249 253Right-handed 310
Helix 83
AJ2
B
254 257Right-handed 310
Helix 84
AJ3
B
258 268Right-handed alpha
Helix 85
AJ4
B
280 282Right-handed 310
Helix 86
AJ5
B
283 288Right-handed alpha
Helix 87
AJ6
B
301 312Right-handed alpha
Helix 88
AJ7
B
314 328Right-handed alpha
Helix 89
AJ8
B
328 335Right-handed alpha
Helix 90
AJ9
B
336 341Right-handed 310
Helix 91
AK1
B
345 349Right-handed 310
Helix 92
AK2
B
360 371Right-handed alpha
Helix 93
AK3
B
376 381Right-handed 310
Helix 94
AK4
B
382 403Right-handed alpha
Helix 95
AK5
B
410 414Right-handed alpha
Helix 96
AK6
B
417 425Right-handed alpha
Helix 97
AK7
B
443 460Right-handed alpha
Helix 98
AK8
B
463 476Right-handed alpha
Helix 99
AK9
B
479 484Right-handed alpha
Helix 100
AL1
B
487 497Right-handed alpha
Helix 101
AL2
B
498 510Right-handed alpha
Helix 102
AL3
B
529 534Right-handed alpha
Helix 103
AL4
B
541 564Right-handed alpha
Helix 104
AL5
B
573 578Right-handed alpha
Helix 105
AL6
B
593 602Right-handed alpha
Helix 106
AL7
B
605 609Right-handed 310
Helix 107
AL8
B
645 653Right-handed alpha
Helix 108
AL9
B
673 684Right-handed alpha
Helix 109
AM1
B
703 711Right-handed 310
Helix 110
AM2
B
725 733Right-handed alpha
Helix 111
AM3
B
779 789Right-handed alpha
Helix 112
AM4
B
807 815Right-handed alpha
Helix 113
AM5
B
833 843Right-handed alpha
Helix 114
AM6
B
863 873Right-handed alpha
Helix 115
AM7
B
891 894Right-handed 310
Helix 116
AM8
B
895 904Right-handed alpha
Helix 117
AM9
B
922 931Right-handed alpha
Helix 118
AN1
B
959 964Right-handed 310
Helix 119
AN2
B
980 993Right-handed alpha
Helix 120
AN3
B
1008 1015Right-handed alpha
Helix 121
AN4
U
1 27Right-handed alpha
Helix 122
AN5
U
30 63Right-handed alpha
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There are 13 sheets in PDB entry 8FVU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 88first strand
Strand 2
A
94 97anti-parallel
Strand 3
A
104 105anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 188first strand
Strand 2
A
195 197anti-parallel
Strand 3
A
203 204anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 306first strand
Strand 2
A
313 315anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
450 453first strand
Strand 2
A
440 444anti-parallel
Strand 3
A
595 599anti-parallel
Strand 4
A
465 470parallel
Strand 5
A
576 582parallel
Strand 6
A
546 551parallel
Strand 7
A
500 505parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
728 731first strand
Strand 2
A
739 742anti-parallel
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There are 17 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
892 894first strand
Strand 2
A
915 920parallel
Strand 3
A
1002 1006parallel
Strand 4
A
1030 1034parallel
Strand 5
A
1055 1060parallel
Strand 6
A
1081 1084parallel
Strand 7
A
1106 1109parallel
Strand 8
A
1133 1137parallel
Strand 9
A
1159 1163parallel
Strand 10
A
1185 1188parallel
Strand 11
A
1210 1212parallel
Strand 12
A
1239 1241parallel
Strand 13
A
1267 1270parallel
Strand 14
A
1296 1299parallel
Strand 15
A
1325 1328parallel
Strand 16
A
1358 1360parallel
Strand 17
A
1388 1390parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1336 1337first strand
Strand 2
A
1364 1365parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 117first strand
Strand 2
B
128 129anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 151first strand
Strand 2
B
139 142anti-parallel
Strand 3
B
294 297anti-parallel
Strand 4
B
165 168parallel
Strand 5
B
274 279parallel
Strand 6
B
243 248parallel
Strand 7
B
199 204parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
408 409first strand
Strand 2
B
438 441anti-parallel
Strand 3
B
427 430anti-parallel
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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
585 587first strand
Strand 2
B
613 616parallel
Strand 3
B
662 666parallel
Strand 4
B
690 695parallel
Strand 5
B
714 720parallel
Strand 6
B
740 744parallel
Strand 7
B
767 771parallel
Strand 8
B
795 796parallel
Strand 9
B
824 825parallel
Strand 10
B
852 853parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
884 885first strand
Strand 2
B
911 913parallel
Strand 3
B
941 943parallel
Strand 4
B
969 970parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1000 1001first strand
Strand 2
B
1021 1022parallel
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