Analysis of interatomic Contacts of Structural Units in PDB entry:
8FWP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FWP entry

There are 2 chains in PDB entry 8FWP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 31ALA 302
B
 PRO 118LEU 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8FWP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 54Right-handed alpha
Helix 2
AA2
A
65 69Right-handed 310
Helix 3
AA3
A
111 131Right-handed alpha
Helix 4
AA4
A
158 169Right-handed alpha
Helix 5
AA5
A
180 184Right-handed 310
Helix 6
AA6
A
185 203Right-handed alpha
Helix 7
AA7
A
216 228Right-handed alpha
Helix 8
AA8
A
267 277Right-handed alpha
Helix 9
AA9
A
279 290Right-handed alpha
Helix 10
AB1
A
290 302Right-handed alpha
Helix 11
AB2
B
131 140Right-handed alpha
Helix 12
AB3
B
215 239Right-handed alpha
Helix 13
AB4
B
265 276Right-handed alpha
Helix 14
AB5
B
287 291Right-handed 310
Helix 15
AB6
B
292 310Right-handed alpha
Helix 16
AB7
B
334 338Right-handed 310
Helix 17
AB8
B
376 385Right-handed alpha
Helix 18
AB9
B
388 399Right-handed alpha
Helix 19
AC1
B
399 409Right-handed alpha
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There are 4 sheets in PDB entry 8FWP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 84first strand
Strand 2
A
91 97anti-parallel
Strand 3
A
32 38parallel
Strand 4
A
145 150parallel
Strand 5
A
174 178parallel
Strand 6
A
232 233parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 243first strand
Strand 2
A
246 252anti-parallel
Strand 3
A
257 259anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 193first strand
Strand 2
B
196 206anti-parallel
Strand 3
B
119 125parallel
Strand 4
B
252 257parallel
Strand 5
B
281 285parallel
Strand 6
B
340 341parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 350first strand
Strand 2
B
356 362anti-parallel
Strand 3
B
365 368anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il