Analysis of interatomic Contacts of Structural Units in PDB entry:
8FXB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FXB entry

There are 4 chains in PDB entry 8FXB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	ILE 2	VAL 104
H	VAL 2	VAL 125
A	SER 19	PRO 612
E	LEU 335	PHE 515

There are 43 helices in PDB entry 8FXB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	30	32	Right-handed 310
Helix 2	AA2	L	80	84	Right-handed 310
Helix 3	AA3	H	28	32	Right-handed 310
Helix 4	AA4	H	62	65	Right-handed 310
Helix 5	AA5	H	74	76	Right-handed 310
Helix 6	AA6	H	87	91	Right-handed 310
Helix 7	AA7	A	20	52	Right-handed alpha
Helix 8	AA8	A	55	80	Right-handed alpha
Helix 9	AA9	A	81	83	Right-handed 310
Helix 10	AB1	A	84	88	Right-handed 310
Helix 11	AB2	A	90	99	Right-handed alpha
Helix 12	AB3	A	103	108	Right-handed 310
Helix 13	AB4	A	109	129	Right-handed alpha
Helix 14	AB5	A	147	155	Right-handed alpha
Helix 15	AB6	A	157	172	Right-handed alpha
Helix 16	AB7	A	177	193	Right-handed alpha
Helix 17	AB8	A	198	204	Right-handed alpha
Helix 18	AB9	A	205	208	Right-handed 310
Helix 19	AC1	A	221	249	Right-handed alpha
Helix 20	AC2	A	265	267	Right-handed 310
Helix 21	AC3	A	293	300	Right-handed alpha
Helix 22	AC4	A	303	317	Right-handed alpha
Helix 23	AC5	A	326	331	Right-handed alpha
Helix 24	AC6	A	365	383	Right-handed alpha
Helix 25	AC7	A	389	393	Right-handed 310
Helix 26	AC8	A	402	413	Right-handed alpha
Helix 27	AC9	A	414	421	Right-handed alpha
Helix 28	AD1	A	431	447	Right-handed alpha
Helix 29	AD2	A	449	466	Right-handed alpha
Helix 30	AD3	A	472	485	Right-handed alpha
Helix 31	AD4	A	498	502	Right-handed 310
Helix 32	AD5	A	503	508	Right-handed alpha
Helix 33	AD6	A	512	514	Right-handed 310
Helix 34	AD7	A	515	533	Right-handed alpha
Helix 35	AD8	A	538	542	Right-handed 310
Helix 36	AD9	A	547	556	Right-handed alpha
Helix 37	AE1	A	565	572	Right-handed alpha
Helix 38	AE2	A	581	588	Right-handed alpha
Helix 39	AE3	A	588	597	Right-handed alpha
Helix 40	AE4	E	338	343	Right-handed alpha
Helix 41	AE5	E	405	410	Right-handed 310
Helix 42	AE6	E	416	422	Right-handed alpha
Helix 43	AE7	E	502	505	Right-handed 310

There are 12 sheets in PDB entry 8FXB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	54	55	first strand
Strand 2	L	46	50	anti-parallel
Strand 3	L	34	39	anti-parallel
Strand 4	L	86	91	anti-parallel
Strand 5	L	97	98	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	54	55	first strand
Strand 2	L	46	50	anti-parallel
Strand 3	L	34	39	anti-parallel
Strand 4	L	86	91	anti-parallel
Strand 5	L	102	103	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	121	124	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	121	124	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	114	117	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	132	first strand
Strand 2	A	142	143	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	263	first strand
Strand 2	A	487	488	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	350	first strand
Strand 2	A	356	359	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	354	358	first strand
Strand 2	E	395	403	anti-parallel
Strand 3	E	507	514	anti-parallel
Strand 4	E	431	437	anti-parallel
Strand 5	E	376	378	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	451	453	first strand
Strand 2	E	493	495	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	473	474	first strand
Strand 2	E	488	489	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FXB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FXB