Analysis of interatomic Contacts of Structural Units in PDB entry:
8FXC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FXC entry

There are 4 chains in PDB entry 8FXC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 ILE 2VAL 104
H
 VAL 2VAL 125
A
 SER 19TYR 613
E
 ASN 334PRO 527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 45 helices in PDB entry 8FXC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
L
80 84Right-handed 310
Helix 2
AA2
H
28 32Right-handed 310
Helix 3
AA3
H
87 91Right-handed 310
Helix 4
AA4
A
20 53Right-handed alpha
Helix 5
AA5
A
55 77Right-handed alpha
Helix 6
AA6
A
78 83Right-handed 310
Helix 7
AA7
A
84 88Right-handed 310
Helix 8
AA8
A
90 98Right-handed alpha
Helix 9
AA9
A
109 129Right-handed alpha
Helix 10
AB1
A
147 154Right-handed alpha
Helix 11
AB2
A
157 172Right-handed alpha
Helix 12
AB3
A
173 175Right-handed 310
Helix 13
AB4
A
176 194Right-handed alpha
Helix 14
AB5
A
198 204Right-handed alpha
Helix 15
AB6
A
205 208Right-handed 310
Helix 16
AB7
A
220 249Right-handed alpha
Helix 17
AB8
A
265 267Right-handed 310
Helix 18
AB9
A
275 279Right-handed 310
Helix 19
AC1
A
293 300Right-handed alpha
Helix 20
AC2
A
303 319Right-handed alpha
Helix 21
AC3
A
324 330Right-handed alpha
Helix 22
AC4
A
365 385Right-handed alpha
Helix 23
AC5
A
389 393Right-handed 310
Helix 24
AC6
A
399 413Right-handed alpha
Helix 25
AC7
A
417 421Right-handed 310
Helix 26
AC8
A
431 447Right-handed alpha
Helix 27
AC9
A
449 466Right-handed alpha
Helix 28
AD1
A
469 471Right-handed 310
Helix 29
AD2
A
472 485Right-handed alpha
Helix 30
AD3
A
499 502Right-handed 310
Helix 31
AD4
A
503 508Right-handed alpha
Helix 32
AD5
A
512 514Right-handed 310
Helix 33
AD6
A
515 533Right-handed alpha
Helix 34
AD7
A
538 542Right-handed 310
Helix 35
AD8
A
547 559Right-handed alpha
Helix 36
AD9
A
565 570Right-handed alpha
Helix 37
AE1
A
581 588Right-handed alpha
Helix 38
AE2
A
588 597Right-handed alpha
Helix 39
AE3
E
338 343Right-handed alpha
Helix 40
AE4
E
349 353Right-handed 310
Helix 41
AE5
E
366 370Right-handed 310
Helix 42
AE6
E
386 389Right-handed 310
Helix 43
AE7
E
405 411Right-handed 310
Helix 44
AE8
E
416 422Right-handed alpha
Helix 45
AE9
E
502 505Right-handed 310
Back to top of page

There are 12 sheets in PDB entry 8FXC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
71 76anti-parallel
Strand 4
L
63 68anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
54 55first strand
Strand 2
L
46 50anti-parallel
Strand 3
L
34 39anti-parallel
Strand 4
L
86 91anti-parallel
Strand 5
L
97 98anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
54 55first strand
Strand 2
L
46 50anti-parallel
Strand 3
L
34 39anti-parallel
Strand 4
L
86 91anti-parallel
Strand 5
L
102 103anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
70 73anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 11first strand
Strand 2
H
121 124parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
33 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 11first strand
Strand 2
H
121 124parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
114 117anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 352first strand
Strand 2
A
355 359anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
354 358first strand
Strand 2
E
395 403anti-parallel
Strand 3
E
507 515anti-parallel
Strand 4
E
431 437anti-parallel
Strand 5
E
376 379anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
391 392first strand
Strand 2
E
524 525anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
452 454first strand
Strand 2
E
492 494anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
473 474first strand
Strand 2
E
488 489anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il