Analysis of interatomic Contacts of Structural Units in PDB entry:
8FXQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FXQ entry

There are 4 chains in PDB entry 8FXQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2	GLU 325
B	ILE -3	GLU 325
W	ALA -1	LYS 2
Y	ALA -1	LYS 2

There are 18 helices in PDB entry 8FXQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	63	Right-handed 310
Helix 2	AA2	A	111	116	Right-handed alpha
Helix 3	AA3	A	127	131	Right-handed 310
Helix 4	AA4	A	138	146	Right-handed alpha
Helix 5	AA5	A	160	164	Right-handed 310
Helix 6	AA6	A	175	179	Right-handed 310
Helix 7	AA7	A	227	239	Right-handed alpha
Helix 8	AA8	A	272	275	Right-handed 310
Helix 9	AA9	A	300	305	Right-handed alpha
Helix 10	AB1	B	59	63	Right-handed 310
Helix 11	AB2	B	111	117	Right-handed alpha
Helix 12	AB3	B	127	131	Right-handed 310
Helix 13	AB4	B	138	146	Right-handed alpha
Helix 14	AB5	B	160	164	Right-handed 310
Helix 15	AB6	B	175	179	Right-handed 310
Helix 16	AB7	B	227	238	Right-handed alpha
Helix 17	AB8	B	272	275	Right-handed 310
Helix 18	AB9	B	300	305	Right-handed alpha

There are 10 sheets in PDB entry 8FXQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	76	first strand
Strand 2	A	82	94	anti-parallel
Strand 3	A	16	23	anti-parallel
Strand 4	A	4	11	anti-parallel
Strand 5	A	167	171	anti-parallel
Strand 6	A	153	158	anti-parallel
Strand 7	A	307	312	anti-parallel
Strand 8	A	317	322	anti-parallel
Strand 9	A	184	187	anti-parallel

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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	76	first strand
Strand 2	A	82	94	anti-parallel
Strand 3	A	97	110	anti-parallel
Strand 4	A	42	44	parallel
Strand 5	A	121	124	anti-parallel
Strand 6	A	28	35	parallel
Strand 7	A	16	23	anti-parallel
Strand 8	A	4	11	anti-parallel
Strand 9	A	167	171	anti-parallel
Strand 10	A	153	158	anti-parallel
Strand 11	A	307	312	anti-parallel
Strand 12	A	317	322	anti-parallel
Strand 13	A	184	187	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	199	first strand
Strand 2	A	213	217	anti-parallel
Strand 3	A	297	299	parallel
Strand 4	A	224	226	anti-parallel
Strand 5	A	289	291	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	210	first strand
Strand 2	A	201	204	anti-parallel
Strand 3	A	260	264	anti-parallel
Strand 4	A	267	271	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	242	first strand
Strand 2	A	248	250	anti-parallel
Strand 3	A	284	287	anti-parallel
Strand 4	A	277	281	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	76	first strand
Strand 2	B	82	94	anti-parallel
Strand 3	B	16	23	anti-parallel
Strand 4	B	4	11	anti-parallel
Strand 5	B	167	171	anti-parallel
Strand 6	B	153	158	anti-parallel
Strand 7	B	307	312	anti-parallel
Strand 8	B	317	322	anti-parallel
Strand 9	B	184	187	anti-parallel

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There are 13 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	76	first strand
Strand 2	B	82	94	anti-parallel
Strand 3	B	97	110	anti-parallel
Strand 4	B	42	44	parallel
Strand 5	B	121	124	anti-parallel
Strand 6	B	28	35	parallel
Strand 7	B	16	23	anti-parallel
Strand 8	B	4	11	anti-parallel
Strand 9	B	167	171	anti-parallel
Strand 10	B	153	158	anti-parallel
Strand 11	B	307	312	anti-parallel
Strand 12	B	317	322	anti-parallel
Strand 13	B	184	187	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	199	first strand
Strand 2	B	213	217	anti-parallel
Strand 3	B	297	299	parallel
Strand 4	B	224	226	anti-parallel
Strand 5	B	289	291	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	210	first strand
Strand 2	B	201	204	anti-parallel
Strand 3	B	260	264	anti-parallel
Strand 4	B	267	271	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	242	first strand
Strand 2	B	248	250	anti-parallel
Strand 3	B	284	287	anti-parallel
Strand 4	B	277	281	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FXQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FXQ