Analysis of interatomic Contacts of Structural Units in PDB entry:
8FXS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FXS entry

There are 3 chains in PDB entry 8FXS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 29	SER 410
B	ASP 30	SER 410
D	VAL 2	GLN 13

There are 14 helices in PDB entry 8FXS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	49	Right-handed alpha
Helix 2	AA2	A	64	82	Right-handed alpha
Helix 3	AA3	A	134	142	Right-handed 310
Helix 4	AA4	A	203	213	Right-handed alpha
Helix 5	AA5	A	214	217	Right-handed 310
Helix 6	AA6	A	287	291	Right-handed 310
Helix 7	AA7	A	322	327	Right-handed alpha
Helix 8	AA8	B	32	49	Right-handed alpha
Helix 9	AA9	B	64	83	Right-handed alpha
Helix 10	AB1	B	134	142	Right-handed 310
Helix 11	AB2	B	203	213	Right-handed alpha
Helix 12	AB3	B	214	217	Right-handed 310
Helix 13	AB4	B	287	291	Right-handed 310
Helix 14	AB5	B	322	327	Right-handed alpha

There are 14 sheets in PDB entry 8FXS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	202	first strand
Strand 2	A	144	153	anti-parallel
Strand 3	A	280	285	anti-parallel
Strand 4	A	101	107	anti-parallel
Strand 5	B	393	404	anti-parallel
Strand 6	B	381	390	anti-parallel
Strand 7	B	331	333	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	124	first strand
Strand 2	A	127	130	anti-parallel
Strand 3	A	220	224	anti-parallel
Strand 4	A	163	171	anti-parallel
Strand 5	A	182	191	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	316	first strand
Strand 2	A	341	343	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	321	first strand
Strand 2	A	336	338	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	333	first strand
Strand 2	A	381	390	anti-parallel
Strand 3	A	393	404	anti-parallel
Strand 4	B	101	107	anti-parallel
Strand 5	B	280	285	anti-parallel
Strand 6	B	144	153	anti-parallel
Strand 7	B	197	202	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	378	first strand
Strand 2	A	407	409	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	122	first strand
Strand 2	B	127	130	anti-parallel
Strand 3	B	220	224	anti-parallel
Strand 4	B	164	171	anti-parallel
Strand 5	B	182	190	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	316	first strand
Strand 2	B	341	343	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	321	first strand
Strand 2	B	336	338	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	378	first strand
Strand 2	B	407	409	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	7	first strand
Strand 2	D	17	23	anti-parallel
Strand 3	D	77	83	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	112	116	parallel
Strand 3	D	91	97	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	45	52	anti-parallel
Strand 6	D	56	59	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	18	24	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	13	first strand
Strand 2	E	112	117	parallel
Strand 3	E	91	96	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	45	52	anti-parallel
Strand 6	E	56	59	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FXS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FXS