Analysis of interatomic Contacts of Structural Units in PDB entry:
8FYC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FYC entry

There are 11 chains in PDB entry 8FYC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
K	ILE 126	PHE 289
J	G 8	T 50
D	MET 1	GLU 93
A	MET 1	GLU 93
B	ASP 20	GLU 311
C	ALA 2	GLU 311
E	ASP 20	GLU 311
F	MET 1	ILE 282
G	A 1	C 57
H	A 1	C 31
I	A 4	T 17

There are 62 helices in PDB entry 8FYC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	K	171	178	Right-handed alpha
Helix 2	AA2	K	181	189	Right-handed alpha
Helix 3	AA3	K	191	203	Right-handed alpha
Helix 4	AA4	K	212	228	Right-handed alpha
Helix 5	AA5	K	238	246	Right-handed alpha
Helix 6	AA6	K	254	262	Right-handed alpha
Helix 7	AA7	K	271	287	Right-handed alpha
Helix 8	AA8	D	12	19	Right-handed alpha
Helix 9	AA9	D	20	22	Right-handed 310
Helix 10	AB1	D	36	51	Right-handed alpha
Helix 11	AB2	A	12	19	Right-handed alpha
Helix 12	AB3	A	20	22	Right-handed 310
Helix 13	AB4	A	36	49	Right-handed alpha
Helix 14	AB5	B	68	77	Right-handed alpha
Helix 15	AB6	B	86	89	Right-handed 310
Helix 16	AB7	B	97	101	Right-handed 310
Helix 17	AB8	B	102	114	Right-handed alpha
Helix 18	AB9	B	114	129	Right-handed alpha
Helix 19	AC1	B	140	163	Right-handed alpha
Helix 20	AC2	B	180	205	Right-handed alpha
Helix 21	AC3	B	219	227	Right-handed alpha
Helix 22	AC4	B	228	230	Right-handed 310
Helix 23	AC5	B	233	245	Right-handed alpha
Helix 24	AC6	B	250	265	Right-handed alpha
Helix 25	AC7	B	266	280	Right-handed alpha
Helix 26	AC8	B	283	287	Right-handed 310
Helix 27	AC9	B	298	303	Right-handed alpha
Helix 28	AD1	B	304	306	Right-handed 310
Helix 29	AD2	C	17	21	Right-handed 310
Helix 30	AD3	C	51	55	Right-handed 310
Helix 31	AD4	C	68	77	Right-handed alpha
Helix 32	AD5	C	102	114	Right-handed alpha
Helix 33	AD6	C	114	130	Right-handed alpha
Helix 34	AD7	C	139	141	Right-handed 310
Helix 35	AD8	C	142	163	Right-handed alpha
Helix 36	AD9	C	180	205	Right-handed alpha
Helix 37	AE1	C	219	231	Right-handed alpha
Helix 38	AE2	C	233	245	Right-handed alpha
Helix 39	AE3	C	250	266	Right-handed alpha
Helix 40	AE4	C	267	281	Right-handed alpha
Helix 41	AE5	E	68	77	Right-handed alpha
Helix 42	AE6	E	97	101	Right-handed 310
Helix 43	AE7	E	102	114	Right-handed alpha
Helix 44	AE8	E	114	130	Right-handed alpha
Helix 45	AE9	E	139	162	Right-handed alpha
Helix 46	AF1	E	180	205	Right-handed alpha
Helix 47	AF2	E	219	224	Right-handed alpha
Helix 48	AF3	E	226	231	Right-handed alpha
Helix 49	AF4	E	233	244	Right-handed alpha
Helix 50	AF5	E	250	265	Right-handed alpha
Helix 51	AF6	E	266	280	Right-handed alpha
Helix 52	AF7	E	298	303	Right-handed alpha
Helix 53	AF8	F	51	53	Right-handed 310
Helix 54	AF9	F	68	78	Right-handed alpha
Helix 55	AG1	F	102	114	Right-handed alpha
Helix 56	AG2	F	114	130	Right-handed alpha
Helix 57	AG3	F	183	204	Right-handed alpha
Helix 58	AG4	F	219	226	Right-handed alpha
Helix 59	AG5	F	226	231	Right-handed alpha
Helix 60	AG6	F	233	244	Right-handed alpha
Helix 61	AG7	F	250	267	Right-handed alpha
Helix 62	AG8	F	267	280	Right-handed alpha

There are 9 sheets in PDB entry 8FYC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	161	164	first strand
Strand 2	K	145	153	anti-parallel
Strand 3	K	128	135	anti-parallel
Strand 4	K	207	209	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	25	first strand
Strand 2	D	30	33	anti-parallel
Strand 3	D	4	9	anti-parallel
Strand 4	D	55	61	anti-parallel
Strand 5	D	68	73	anti-parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	81	first strand
Strand 2	D	86	91	anti-parallel
Strand 3	C	46	49	anti-parallel
Strand 4	C	38	42	anti-parallel
Strand 5	C	30	35	anti-parallel
Strand 6	C	64	67	parallel
Strand 7	B	65	67	anti-parallel
Strand 8	B	30	34	parallel
Strand 9	B	39	43	anti-parallel
Strand 10	B	46	48	anti-parallel
Strand 11	B	309	310	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	27	first strand
Strand 2	A	30	33	anti-parallel
Strand 3	A	4	9	anti-parallel
Strand 4	A	55	61	anti-parallel
Strand 5	A	68	73	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	82	first strand
Strand 2	A	85	91	anti-parallel
Strand 3	F	46	48	anti-parallel
Strand 4	F	39	42	anti-parallel
Strand 5	F	31	34	anti-parallel
Strand 6	F	65	67	parallel
Strand 7	E	65	67	anti-parallel
Strand 8	E	31	34	parallel
Strand 9	E	39	41	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	291	first strand
Strand 2	B	21	27	parallel
Strand 3	B	57	60	parallel
Strand 4	B	80	84	parallel
Strand 5	B	91	95	anti-parallel
Strand 6	C	88	95	anti-parallel
Strand 7	C	80	85	anti-parallel
Strand 8	C	57	60	parallel
Strand 9	C	24	25	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	215	first strand
Strand 2	C	294	296	anti-parallel
Strand 3	C	302	303	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	289	292	first strand
Strand 2	E	21	27	parallel
Strand 3	E	57	60	parallel
Strand 4	E	81	84	parallel
Strand 5	E	91	95	anti-parallel
Strand 6	F	89	94	anti-parallel
Strand 7	F	80	84	anti-parallel
Strand 8	F	55	60	parallel
Strand 9	F	22	25	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	48	first strand
Strand 2	E	309	310	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FYC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FYC