Analysis of interatomic Contacts of Structural Units in PDB entry:
8FYD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8FYD entry

There are 10 chains in PDB entry 8FYD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
J
 T 1 C 49
A
 MET 1GLU 93
B
 ASP 20GLU 311
C
 ALA 2LEU 279
D
 MET 1GLU 93
E
 ASP 20GLU 311
F
 ALA 2ILE 282
G
 A 1 A 64
H
 A 1 T 30
I
 G 5 T 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 8FYD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 19Right-handed alpha
Helix 2
AA2
A
20 22Right-handed 310
Helix 3
AA3
A
36 51Right-handed alpha
Helix 4
AA4
B
51 55Right-handed 310
Helix 5
AA5
B
68 76Right-handed alpha
Helix 6
AA6
B
86 89Right-handed 310
Helix 7
AA7
B
97 101Right-handed 310
Helix 8
AA8
B
102 114Right-handed alpha
Helix 9
AA9
B
114 130Right-handed alpha
Helix 10
AB1
B
139 162Right-handed alpha
Helix 11
AB2
B
180 205Right-handed alpha
Helix 12
AB3
B
219 231Right-handed alpha
Helix 13
AB4
B
233 244Right-handed alpha
Helix 14
AB5
B
251 263Right-handed alpha
Helix 15
AB6
B
266 280Right-handed alpha
Helix 16
AB7
B
283 287Right-handed 310
Helix 17
AB8
B
298 303Right-handed alpha
Helix 18
AB9
B
304 306Right-handed 310
Helix 19
AC1
C
17 21Right-handed 310
Helix 20
AC2
C
51 53Right-handed 310
Helix 21
AC3
C
68 77Right-handed alpha
Helix 22
AC4
C
102 114Right-handed alpha
Helix 23
AC5
C
114 130Right-handed alpha
Helix 24
AC6
C
139 163Right-handed alpha
Helix 25
AC7
C
180 204Right-handed alpha
Helix 26
AC8
C
219 231Right-handed alpha
Helix 27
AC9
C
233 245Right-handed alpha
Helix 28
AD1
C
250 266Right-handed alpha
Helix 29
AD2
C
267 278Right-handed alpha
Helix 30
AD3
D
12 19Right-handed alpha
Helix 31
AD4
D
20 22Right-handed 310
Helix 32
AD5
D
36 51Right-handed alpha
Helix 33
AD6
E
68 77Right-handed alpha
Helix 34
AD7
E
97 101Right-handed 310
Helix 35
AD8
E
102 114Right-handed alpha
Helix 36
AD9
E
114 129Right-handed alpha
Helix 37
AE1
E
139 162Right-handed alpha
Helix 38
AE2
E
180 205Right-handed alpha
Helix 39
AE3
E
219 231Right-handed alpha
Helix 40
AE4
E
233 245Right-handed alpha
Helix 41
AE5
E
251 265Right-handed alpha
Helix 42
AE6
E
266 280Right-handed alpha
Helix 43
AE7
E
298 303Right-handed alpha
Helix 44
AE8
E
304 306Right-handed 310
Helix 45
AE9
F
11 15Right-handed 310
Helix 46
AF1
F
17 21Right-handed 310
Helix 47
AF2
F
51 55Right-handed 310
Helix 48
AF3
F
67 78Right-handed alpha
Helix 49
AF4
F
102 114Right-handed alpha
Helix 50
AF5
F
114 130Right-handed alpha
Helix 51
AF6
F
139 163Right-handed alpha
Helix 52
AF7
F
180 205Right-handed alpha
Helix 53
AF8
F
219 229Right-handed alpha
Helix 54
AF9
F
233 244Right-handed alpha
Helix 55
AG1
F
250 267Right-handed alpha
Helix 56
AG2
F
267 280Right-handed alpha
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There are 7 sheets in PDB entry 8FYD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
30 33anti-parallel
Strand 3
A
4 9anti-parallel
Strand 4
A
55 61anti-parallel
Strand 5
A
68 73anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
86 91anti-parallel
Strand 3
F
46 48anti-parallel
Strand 4
F
39 42anti-parallel
Strand 5
F
31 34anti-parallel
Strand 6
F
65 66parallel
Strand 7
E
65 67anti-parallel
Strand 8
E
31 34parallel
Strand 9
E
39 41anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 94first strand
Strand 2
B
80 84anti-parallel
Strand 3
B
57 60parallel
Strand 4
B
21 27parallel
Strand 5
B
289 291parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 310first strand
Strand 2
B
47 48anti-parallel
Strand 3
B
39 42anti-parallel
Strand 4
B
30 34anti-parallel
Strand 5
B
64 67parallel
Strand 6
C
65 67anti-parallel
Strand 7
C
31 34parallel
Strand 8
C
39 42anti-parallel
Strand 9
C
46 49anti-parallel
Strand 10
D
86 91anti-parallel
Strand 11
D
78 81anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 27first strand
Strand 2
C
55 60parallel
Strand 3
C
80 83parallel
Strand 4
C
92 93anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
24 27first strand
Strand 2
D
30 34anti-parallel
Strand 3
D
3 9anti-parallel
Strand 4
D
55 61anti-parallel
Strand 5
D
68 73anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
289 293first strand
Strand 2
E
21 27parallel
Strand 3
E
57 60parallel
Strand 4
E
80 84parallel
Strand 5
E
91 95anti-parallel
Strand 6
F
88 94anti-parallel
Strand 7
F
80 85anti-parallel
Strand 8
F
57 60parallel
Strand 9
F
24 25parallel
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