Analysis of interatomic Contacts of Structural Units in PDB entry:
8FYG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FYG entry

There are 2 chains in PDB entry 8FYG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 41	ALA 803
B	ASP 41	ALA 803

There are 47 helices in PDB entry 8FYG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	56	Right-handed alpha
Helix 2	AA2	A	57	60	Right-handed 310
Helix 3	AA3	A	64	85	Right-handed alpha
Helix 4	AA4	A	104	123	Right-handed alpha
Helix 5	AA5	A	132	150	Right-handed alpha
Helix 6	AA6	A	160	166	Right-handed alpha
Helix 7	AA7	A	166	179	Right-handed alpha
Helix 8	AA8	A	184	199	Right-handed alpha
Helix 9	AA9	A	207	211	Right-handed 310
Helix 10	AB1	A	223	242	Right-handed alpha
Helix 11	AB2	A	243	253	Right-handed alpha
Helix 12	AB3	A	254	259	Right-handed 310
Helix 13	AB4	A	285	301	Right-handed alpha
Helix 14	AB5	A	308	323	Right-handed alpha
Helix 15	AB6	A	334	343	Right-handed 310
Helix 16	AB7	A	347	363	Right-handed alpha
Helix 17	AB8	A	364	366	Right-handed 310
Helix 18	AB9	A	367	385	Right-handed alpha
Helix 19	AC1	A	395	407	Right-handed alpha
Helix 20	AC2	A	479	484	Right-handed alpha
Helix 21	AC3	A	505	509	Right-handed 310
Helix 22	AC4	A	627	632	Right-handed alpha
Helix 23	AC5	A	669	679	Right-handed alpha
Helix 24	AC6	A	680	684	Right-handed 310
Helix 25	AC7	B	42	56	Right-handed alpha
Helix 26	AC8	B	57	60	Right-handed 310
Helix 27	AC9	B	64	85	Right-handed alpha
Helix 28	AD1	B	104	123	Right-handed alpha
Helix 29	AD2	B	132	150	Right-handed alpha
Helix 30	AD3	B	160	166	Right-handed alpha
Helix 31	AD4	B	166	179	Right-handed alpha
Helix 32	AD5	B	184	199	Right-handed alpha
Helix 33	AD6	B	207	211	Right-handed 310
Helix 34	AD7	B	223	242	Right-handed alpha
Helix 35	AD8	B	243	253	Right-handed alpha
Helix 36	AD9	B	254	259	Right-handed 310
Helix 37	AE1	B	285	301	Right-handed alpha
Helix 38	AE2	B	308	323	Right-handed alpha
Helix 39	AE3	B	334	343	Right-handed 310
Helix 40	AE4	B	347	363	Right-handed alpha
Helix 41	AE5	B	364	366	Right-handed 310
Helix 42	AE6	B	367	385	Right-handed alpha
Helix 43	AE7	B	395	407	Right-handed alpha
Helix 44	AE8	B	479	484	Right-handed alpha
Helix 45	AE9	B	505	509	Right-handed 310
Helix 46	AF1	B	628	632	Right-handed alpha
Helix 47	AF2	B	669	679	Right-handed alpha

There are 16 sheets in PDB entry 8FYG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	205	first strand
Strand 2	A	220	221	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	A	273	275	anti-parallel
Strand 3	A	279	280	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	328	first strand
Strand 2	A	331	332	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	420	first strand
Strand 2	A	425	429	anti-parallel
Strand 3	A	434	438	anti-parallel
Strand 4	A	464	468	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	495	first strand
Strand 2	A	566	575	anti-parallel
Strand 3	A	644	654	anti-parallel
Strand 4	A	616	626	anti-parallel
Strand 5	A	593	596	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	517	522	first strand
Strand 2	A	525	533	anti-parallel
Strand 3	A	540	547	anti-parallel
Strand 4	A	552	560	anti-parallel
Strand 5	A	660	666	anti-parallel
Strand 6	A	607	611	anti-parallel
Strand 7	A	600	603	anti-parallel
Strand 8	A	582	584	anti-parallel
Strand 9	A	587	589	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	686	690	first strand
Strand 2	A	694	700	anti-parallel
Strand 3	A	710	716	anti-parallel
Strand 4	A	731	738	anti-parallel
Strand 5	A	741	747	anti-parallel
Strand 6	A	796	802	anti-parallel
Strand 7	A	764	767	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	720	722	first strand
Strand 2	A	725	727	anti-parallel
Strand 3	A	755	761	anti-parallel
Strand 4	A	781	787	anti-parallel
Strand 5	A	773	777	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	205	first strand
Strand 2	B	220	221	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	B	273	275	anti-parallel
Strand 3	B	279	280	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	328	first strand
Strand 2	B	331	332	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	420	first strand
Strand 2	B	425	429	anti-parallel
Strand 3	B	434	438	anti-parallel
Strand 4	B	464	468	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	493	495	first strand
Strand 2	B	566	575	anti-parallel
Strand 3	B	643	654	anti-parallel
Strand 4	B	616	627	anti-parallel
Strand 5	B	593	596	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	517	522	first strand
Strand 2	B	525	533	anti-parallel
Strand 3	B	540	547	anti-parallel
Strand 4	B	552	560	anti-parallel
Strand 5	B	660	666	anti-parallel
Strand 6	B	607	611	anti-parallel
Strand 7	B	600	603	anti-parallel
Strand 8	B	582	584	anti-parallel
Strand 9	B	587	589	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	686	690	first strand
Strand 2	B	694	700	anti-parallel
Strand 3	B	710	716	anti-parallel
Strand 4	B	731	738	anti-parallel
Strand 5	B	741	747	anti-parallel
Strand 6	B	796	802	anti-parallel
Strand 7	B	764	767	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	720	722	first strand
Strand 2	B	725	727	anti-parallel
Strand 3	B	755	761	anti-parallel
Strand 4	B	781	787	anti-parallel
Strand 5	B	773	777	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FYG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FYG