Analysis of interatomic Contacts of Structural Units in PDB entry:
8FYJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8FYJ entry

There are 6 chains in PDB entry 8FYJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 34	ARG 504
B	LEU 34	CYS 501
C	THR 37	ARG 504
D	PHE 519	ASP 659
E	PHE 519	ASP 659
F	GLY 516	THR 569

There are 40 helices in PDB entry 8FYJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	64	74	Right-handed alpha
Helix 2	AA2	A	99	115	Right-handed alpha
Helix 3	AA3	A	337	353	Right-handed alpha
Helix 4	AA4	A	368	373	Right-handed alpha
Helix 5	AA5	A	474	483	Right-handed alpha
Helix 6	AA6	B	64	73	Right-handed alpha
Helix 7	AA7	B	99	116	Right-handed alpha
Helix 8	AA8	B	337	353	Right-handed alpha
Helix 9	AA9	B	368	373	Right-handed alpha
Helix 10	AB1	B	474	483	Right-handed alpha
Helix 11	AB2	C	98	117	Right-handed alpha
Helix 12	AB3	C	122	126	Right-handed 310
Helix 13	AB4	C	334	354	Right-handed alpha
Helix 14	AB5	C	368	373	Right-handed alpha
Helix 15	AB6	C	387	392	Right-handed alpha
Helix 16	AB7	C	425	429	Right-handed 310
Helix 17	AB8	C	475	483	Right-handed alpha
Helix 18	AB9	D	529	537	Right-handed alpha
Helix 19	AC1	D	538	540	Right-handed 310
Helix 20	AC2	D	564	596	Right-handed alpha
Helix 21	AC3	D	618	626	Right-handed alpha
Helix 22	AC4	D	627	636	Right-handed alpha
Helix 23	AC5	D	638	659	Right-handed alpha
Helix 24	AC6	E	521	526	Right-handed 310
Helix 25	AC7	E	529	538	Right-handed alpha
Helix 26	AC8	E	562	596	Right-handed alpha
Helix 27	AC9	E	618	625	Right-handed alpha
Helix 28	AD1	E	627	637	Right-handed alpha
Helix 29	AD2	E	638	659	Right-handed alpha
Helix 30	AD3	F	530	542	Right-handed alpha
Helix 31	AD4	F	563	596	Right-handed alpha
Helix 32	AD5	F	618	625	Right-handed alpha
Helix 33	AD6	F	627	637	Right-handed alpha
Helix 34	AD7	F	638	654	Right-handed alpha
Helix 35	AD8	Y	58	62	Right-handed 310
Helix 36	AD9	Y	75	79	Right-handed 310
Helix 37	AE1	Y	150	154	Right-handed 310
Helix 38	AE2	Z	58	62	Right-handed 310
Helix 39	AE3	Z	75	79	Right-handed 310
Helix 40	AE4	Z	150	154	Right-handed 310

There are 32 sheets in PDB entry 8FYJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	39	first strand
Strand 2	D	603	609	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	46	first strand
Strand 2	A	487	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	84	86	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	215	218	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	236	239	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	202	first strand
Strand 2	A	120	123	anti-parallel
Strand 3	A	432	434	anti-parallel
Strand 4	A	423	424	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	261	first strand
Strand 2	A	449	455	anti-parallel
Strand 3	A	284	292	anti-parallel
Strand 4	A	271	273	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	261	first strand
Strand 2	A	449	455	anti-parallel
Strand 3	A	467	470	anti-parallel
Strand 4	A	360	361	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	378	first strand
Strand 2	A	381	385	anti-parallel
Strand 3	A	418	420	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	498	first strand
Strand 2	B	35	39	anti-parallel
Strand 3	E	603	609	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	47	first strand
Strand 2	B	486	491	anti-parallel
Strand 3	B	223	228	anti-parallel
Strand 4	B	242	245	anti-parallel
Strand 5	B	83	85	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	216	218	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	94	first strand
Strand 2	B	236	239	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	199	first strand
Strand 2	B	120	124	anti-parallel
Strand 3	B	432	434	anti-parallel
Strand 4	B	423	425	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	260	first strand
Strand 2	B	444	456	anti-parallel
Strand 3	B	284	297	anti-parallel
Strand 4	B	271	274	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	260	first strand
Strand 2	B	444	456	anti-parallel
Strand 3	B	466	470	anti-parallel
Strand 4	B	359	361	parallel
Strand 5	B	394	395	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	376	first strand
Strand 2	B	383	385	anti-parallel
Strand 3	B	418	420	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	40	first strand
Strand 2	C	494	496	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	486	491	anti-parallel
Strand 3	C	224	228	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	83	86	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	56	first strand
Strand 2	C	215	218	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	177	first strand
Strand 2	C	154	159	anti-parallel
Strand 3	C	129	134	anti-parallel
Strand 4	C	190	193	anti-parallel
Strand 5	C	181	183	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	203	first strand
Strand 2	C	433	435	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	260	261	first strand
Strand 2	C	443	456	anti-parallel
Strand 3	C	466	469	anti-parallel
Strand 4	C	359	360	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	273	first strand
Strand 2	C	284	287	anti-parallel
Strand 3	C	443	456	anti-parallel
Strand 4	C	292	298	anti-parallel
Strand 5	C	330	332	anti-parallel
Strand 6	C	415	416	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	307	first strand
Strand 2	C	317	323	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	378	first strand
Strand 2	C	381	385	anti-parallel
Strand 3	C	419	421	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	3	4	first strand
Strand 2	Y	91	95	parallel
Strand 3	Y	82	84	anti-parallel
Strand 4	Y	27	30	anti-parallel
Strand 5	Y	35	40	anti-parallel
Strand 6	Y	43	45	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	12	17	first strand
Strand 2	Y	66	71	anti-parallel
Strand 3	Y	55	56	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	100	102	first strand
Strand 2	Y	116	118	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	2	6	first strand
Strand 2	Z	92	97	parallel
Strand 3	Z	82	83	anti-parallel
Strand 4	Z	27	30	anti-parallel
Strand 5	Z	35	40	anti-parallel
Strand 6	Z	43	46	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	13	14	first strand
Strand 2	Z	69	71	anti-parallel
Strand 3	Z	55	56	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	99	102	first strand
Strand 2	Z	116	119	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	137	139	first strand
Strand 2	Z	127	131	anti-parallel
Strand 3	Z	161	162	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8FYJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8FYJ